Table 1 of
Darden, Mol Vis 2003;
9:191-199.Table 1 of
Darden, Mol Vis 2003;
9:191-199.
Table 1. Reference information for opsin proteins
The 92 opsin peptides shown in Figure 3 are listed with the GenBank accession number(s) of their nucleic acid, the common name of the species, and the Latin name of the species.
GenBank
accession
Nucleic acid number Common name Species
-------------- --------- ----------------- ---------------------------------
anolisRhod.pep L31503 green anole Anolis carolinensis
anoleSWS1.pep AH007736 green anole Anolis carolinensis
anoleSWS2.pep AF133907 green anole Anolis carolinensis
bnikosws2.pep AJ430474 teleost Batrachocottus nicolskii
bovineblu.pep U92557 cow Bos taurus
bovinrhod.pep K00502 cow Bos taurus
K00503
K00504
K00505
K00506
budgergrGR.pep AF021241 budgerigar Melopsittacus undulates
budgergrRH.pep AF021242 budgerigar Melopsittacus undulates
budgergrUV.pep Y11787 budgerigar Melopsittacus undulates
carasrhod.pep L11863 goldfish Carassius auratus
carasblue.pep L11864 goldfish Carassius auratus
carassred.pep L11867 goldfish Carassius auratus
catfspinop.pep AF028014 channel catfish Ictalurus punctatus
cavefshblu.pep S66818 Mexican characin Astyanax fasciatus
S66821 cavefish tetra
S66828
S66829
S66838
cavefshgr4.pep U12024 Mexican characin Astyanax fasciatus
cavefish tetra
cavefshgr5.pep U12025 Mexican characin Astyanax fasciatus
cavefish tetra
cavefshred.pep M90075 Mexican characin Astyanax fasciatus
cavefish tetra
ceurysws2.pep AJ430469 teleost Cyphocottus eurystomus
AJ430470
AJ430471
AJ430472
AJ430473
chickred1.pep M62903 chicken Gallus gallus
chickred2.pep X57490 chicken Gallus gallus
chickblue.pep M92037 chicken Gallus gallus
chickrhod.pep D00702 chicken Gallus gallus
chickviol.pep M92039 chicken Gallus gallus
chickgrn1.pep M92038 chicken Gallus gallus
chickprhod.pep U87449 chicken Gallus gallus
ckesssws2.pep AJ430484 Kessler's Cottus kessleri
AJ430485 sculpin
AJ430486
AJ430487
AJ430488
cinersws2.pep AJ430479 longfin Baikal Cottocomephorus inermis
AJ430480 sculpin
AJ430481
AJ430482
AJ430483
cgobisws2.pep AJ430489 bullhead Cottus gobio
congerblue.pep S82619 conger eel Conger conger
cpyrrsws2.pep AB040148 Japanese Cynops pyrrhogaster
firebelly newt
dreriosws2.pep AF109372 Zebrafish Danio rerio
dcompsws2.pep AF247117 cichlid teleost Dimidiochromis compressiceps
dcompsws2a.pep AF247129 cichlid teleost Dimidiochromis compressiceps
gekko467a.pep M92035 tokay gecko Gekko gecko
gekko521a.pep M92036 tokay gecko Gekko gecko
goldfshUV.pep D85863 goldfish Carassius auratus
goldfshgr1.pep L11865 goldfish Carassius auratus
goldfshgr2.pep L11866 goldfish Carassius auratus
domcatred1.pep AF031532 cat Felis catus
honeyBlong.pep U26026 honeybee Apis mellifera
honeybeeUV.pep U70841 honeybee Apis mellifera
honeybeblu.pep AAC13417 honeybee Apis mellifera
howlerblue.pep AF039418 mantled howler Alouatta palliate
AF039419 monkey
AF039420
AF039421
humanblue.pep M13295 human Homo sapiens
M13296
M13297
M13298
humangren.pep M13306 human Homo sapiens
K03490
K03491
K03492
K03493
K03494
humanred1.pep M13300 human Homo sapiens
M13301
M13302
M13303
M13304
M13305
humanrhod.pep K02281 human Homo sapiens
hhipposws2.pep AF316497 Atlantic halibut Hippoglossus hippoglossus
lampreyrho.pep U67123 sea lamprey Petromyzon marinus
lfuelsws2.pep AF247119 cichlid teleost Labeotropheus fuelleborni
lfuelsws2a.pep AF247115 cichlid teleost Labeotropheus fuelleborni
lmprypinop.pep U90667 sea lamprey Petromyzon marinus
U90668
U90669
U90670
U90671
medakablu.pep AB001602 Japanese medaka Oryzias latipes
medakagrn.pep AB001603 Japanese medaka Oryzias latipes
medakared.pep AB001604 Japanese medaka Oryzias latipes
medakaviol.pep AB001605 Japanese medaka Oryzias latipes
mouserhod.pep M55171 house mouse Mus musculus
mousegreen.pep AF011389 house mouse Mus musculus
mouseblue.pep U49720 house mouse Mus musculus
mzebrasws2.pep AF317674 zebra mbuna Metriaclima zebra
cichlid teleost
mzebrsws2a.pep AF247114 zebra mbuna Metriaclima zebra
cichlid teleost
onilosws2.pep AF247120 Nile tilapia Oreochromis niloticus
onilosws2a.pep AF247116 Nile tilapia Oreochromis niloticus
pigeonRH1.pep AF149230 domestic pigeon Columba livia
pigeonRH2.pep AF149232 domestic pigeon Columba livia
AF149233
pigeonSWS1.pep AH007798 domestic pigeon Columba livia
pigeonSWS2.pep AH007799 domestic pigeon Columba livia
pigeonLWS.pep AH007800 domestic pigeon Columba livia
pigeonpine.pep U50598 domestic pigeon Columba livia
ranacatrho.pep S79840 bullfrog Rana catesbeiana
rcatgrnrod.pep AB010085 bullfrog Rana catesbeiana
rcatSmBluc.pep AB001983 bullfrog Rana catesbeiana
salamanUV.pep AF038948 tiger salamander Ambystoma tigrinum
salamanblu.pep AF038946 tiger salamander Ambystoma tigrinum
salamanred.pep AF038947 tiger salamander Ambystoma tigrinum
salamanrho.pep U36574 tiger salamander Ambystoma tigrinum
salmonAnct.pep AF001499 Atlantic salmon Salmo salar
scalOpsnGo.pep AB006455 Yessa scallop Patinopecten yessoensis synonym
Mizuhopecten yessoensis
scalOpsnGq.pep AB006454 Yessa scallop Patinopecten yessoensis synonym
Mizuhopecten yessoensis
scanarsws2.pep AJ277923 common canary Serinus canaria
xenopTdrho.pep L04692 African clawed Xenopus laevis
frog, Tadpole
xenopusrho.pep L07770 African clawed Xenopus laevis
frog, Adult
xenopusRED.pep U90895 African clawed Xenopus laevis
frog
xenopusUV.pep U23463 African clawed Xenopus laevis
frog
xenopblue.pep AY177405 African clawed Xenopus laevis
frog
zebraBlue.pep AF109372 Zebrafish Danio rerio
zebrafsgrn.pep AF109370 Zebrafish Danio rerio
zebfishUV.pep L11014 Zebrafish Danio rerio
zebFTgrhod.pep AF222329 Zebrafinch Taeniopygia guttata
zebFTgrho2.pep AF222330 Zebrafinch Taeniopygia guttata
zebFTgSWS1.pep AF222331 Zebrafinch Taeniopygia guttata
zebFTgSWS2.pep AF222332 Zebrafinch Taeniopygia guttata
zebFTgLWS.pep AF222333 Zebrafinch Taeniopygia guttata
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