Table 4 of
Wistow, Mol Vis 2002;
8:205-220.Table 4 of
Wistow, Mol Vis 2002;
8:205-220.
Table 4. Matrix related proteins represented in the cs sequence collection
This table lists matrix related proteins represented by cDNAs in the RPE/choroid sequence collection. The listing is derived from GRIST processing and arranged alphabetically as in Table 2. The sequence highlighted in red, rpe-spondin, is a novel sequence derived from this study.
Description GenBank Unigene Chromosome # -------------------------------------------------- --------- ------- ------------- -- acidic protein rich in leucines NM_006401 84264 15q25 3 amplified in osteosarcoma (OS-9) NM_006812 76228 12 4 biglycan J04599 821 Xq28 6 BMP 7 (osteogenic protein 1) M60316 170195 20 1 cadherin 11, type 2, OB-cadherin (osteoblast) D21254 75929 16q22.1 1 CD36 antigen (thrombospondin receptor)-like 1 XM_006738 180616 12 1 CD36 antigen (thrombospondin receptor)-like 2 XM_003417 323567 4 4 chondroitin sulfate proteoglycan BEHAB/brevican AF229053 6194 1q31 1 collagen, type I, α 1 NM_000088 172928 7q21.3-q22.1 1 collagen, type I, α 2 NM_000089 179573 7q22.1 5 collagen, type III, α 1 X06700 119571 2q31 1 collagen, type IV, α 1 NM_001845 119129 13q34 1 collagen, type IV, α 5 M58526 169825 Xq22 2 collagen, type IV, α 6 U04845 408 Xq22 2 collagen, type IX, α 1 NM_001851 154850 6q12-q14 3 collagen, type IX, α 2 M95610 37165 1p33-p32 5 collagen, type IX, α 3 XM_009609 53563 20q13.3 3 collagen, type V, α 1 M76729 146428 9q34.2-q34.3 1 collagen, type VI, α 1 X99136 108885 21q22.3 4 collagen, type VI, α 2 M20777 159263 21q22.3 1 collagen, type VIII, α 1 XM_002965 114599 3q12-q13.1 1 collagen, type VIII, α 2 M60832 249239 1p34.2-p32.3 1 collagen, type XI, α 1 XM_001849 82772 1p21 1 collagen, type XII, α 1 AL359627 16869 2 collagen, type XIV, α 1 (undulin) M64108 36131 8q23 1 collagen, type XIX α1 chain AB004594 1 collagen, type XVI, α 1 NM_001856 26208 1p35-p34 1 collagen, type XVIII, α 1 AF018081 78409 21q22.3 4 conserved gene amplified in osteosarcoma (OS-4) AF000152 180669 12q13-q15 4 decorin M14219 76152 12q23 6 dystroglycan 1 (dystrophin-associated L19711 76111 3p21 1 glycoprotein 1) EGF-containing fibulin-like extracellular matrix XM_002258 76224 2p16 4 protein 1 fibronectin 1 AF130095 287820 2q34 1 fibronectin leucine rich transmembrane protein 2 XM_007283 48998 14q24-q32 2 ficolin (collagen/fibrinogen domain-containing) 3 AL161983 21415 3 1 heparan sulfate proteoglycan 2 (perlecan) M85289 211573 1p36.1-p35 3 hypothetical protein, expressed in osteoblast AB000115 75470 1 1 integrin, α 5 (fibronectin receptor, α M13918 149609 12q11-q13 1 polypeptide) integrin, α V (vitronectin receptor, α M14648 295726 2q31-q32 4 polypeptide) integrin, β 1 (fibronectin receptor, β) NM_002211 287797 2 interphotoreceptor matrix proteoglycan 1 AF047492 129882 6q14.2-q15 2 interphotoreceptor matrix proteoglycan 200 (IMPG2) AF271378 1 kinectin 1 (kinesin receptor) L25616 211577 14q22.1 1 laminin receptor 1 (67kD, ribosomal protein SA) NM_002295 181357 3p21.3 2 laminin, α 3 (nicein, kalinin, BM600, L34155 83450 18q11.2 2 epilegrin) laminin, α 4 NM_002290 78672 6q21 2 laminin, β 1 XM_011616 82124 7q22 1 laminin, β 2 (laminin S) NM_002292 90291 3p21 9 laminin, γ 1 (formerly LAMB2) XM_002204 214982 1q31 2 matrix Gla protein NM_000900 279009 12p13.1-p12.3 1 meningioma expressed antigen 5 (hyaluronidase) NM_012215 5734 10q24.1-q24.3 2 MEPE matrix phosphoglycoprotein (bone) AJ276396 283095 4q21.1 1 opticin/oculoglycan AF161702 241413 1p36.13-q31.3 15 osteoblast specific factor 2 (fasciclin I-like) D13666 136348 13 1 osteoclast stimulating factor 1 95821 12q24.1-24.2 1 osteoglycin (osteoinductive factor, mimecan) XM_011797 109439 9q22 1 osteomodulin/osteoadherin NM_005014 94070 9p24.1-q22.33 1 osteopontin (bone sialoprotein I, nephropontin) J04765 313 4q21-q25 6 predicted osteoblast protein NM_014888 29882 7q22.1-q31.1 2 procollagen (type III) N-endopeptidase NM_002768 183138 16q24.3 2 procollagen C-endopeptidase enhancer AB008549 202097 7q22 2 proteoglycan 4 NM_005807 218791 1q25-q31 1 PTH-responsive osteosarcoma B1 protein AF095771 79340 7p14 1 rpe-spondin 122544 8 1 sarcoglycan, β NM_000232 77501 4q12 1 sarcoglycan, ε AF036364 110708 7q21-q22 1 semaphorin 3A XM_004913 2414 2q37-qter 1 semaphorin E AB000220 171921 7q21-q31 2 semaphorin SEMA6A1 AF279656 263395 5q23 1 semaphorin Y AB022434 54937 1 SEMB AB029394 7634 1 1 SPARC/osteonectin J03040 111779 5q31.3-q32 14 syndecan 2 J04621 1501 8q22-q23 2 testican-1(steonectin, cwcv,kazal-like domains) AF231124 93029 5q31 1 thrombospondin 1 NM_003246 87409 15q15 1 vitronectin NM_000638 2257 17q11 4 55% protein similarity to: α-1 type 2 collagen 1 |