Table 2 of
Wistow, Mol Vis 2002;
8:205-220.Table 2 of
Wistow, Mol Vis 2002;
8:205-220.
Table 2. Transcription factors and related proteins represented in the cs sequence collection
Listing is derived from GRIST processing as in Table 1. Clones are ranked alphabetically. Some clones have matches with either GenBank or Unigene but not both. Some clones are novel at the DNA level and therefore show no database matches but still reveal similarities in predicted protein sequence, as shown. The clone highlighted in red, TIRC, was derived from this study.
Description GenBank UniGene Chromosome # ---------------------------------------------- --------- ------- --------------- - activated pol II transcription cofactor 4 NM_006713 74861 5 1 AF10 (trithorax homolog) NM_004641 301209 1 AP-2 X77343 18387 6p24 1 ATF-3 L19871 460 1 1 ATF-4 D90209 181243 22q13.1 1 basic transcription factor 3 X74070 101025 5 2 BAZ2A AB002312 277401 12q24.3-qter 2 β3 class B bHLH S80870 1 BHLHB2 AB004066 171825 3 6 C/EBPγ NM_001806 2227 19 1 CBF1 interacting corepressor 89421 2 1 CCR4-NOT transcription complex, subunit 2 AK000662 239720 12 1 c-FOS NM_005252 25647 14q24.3 5 chromobox homolog 3 AB030905 8123 2 chromobox homolog 6 NM_014292 107374 22q13.1 4 chromodomainDNA binding protein 3 U91543 25601 17p13.1 1 c-jun NM_002228 78465 1p32-p31 2 cofactor required for Sp1activation, subunit 2 AF070563 21586 Xp11.2-p11.4 1 CREG AF084523 5710 1q24 3 cyclin D binding Myb-like factor 1 AF084530 5671 7q21 3 D-box binding protein NM_001352 155402 19q13.3 1 death associated transcription factor 1 AB002331 155313 2 DEK oncogene (DNA binding) NM_003472 110713 6p23 2 E4TF1-60 D13318 78 21q21.3 1 EBNA-2 co-activator (p100) NM_014390 79093 7q31 3 ELF-2A AF256222 82143 4q28 1 enhancer of zeste homolog 1 AB004818 194669 17q21.1-q21.3 2 estrogen receptor 1 NM_000125 1657 6q25.1 1 ETR103 M62829 738 5q31.1 1 FACT 140 AF152961 14963 14 1 forkhead box F2 (FOXF2) NM_001452 44481 6p25.3 1 forkhead box O1A AF032885 170133 13q14.1 1 forkhead box O3A AJ001590 14845 6q21 1 GIOT-2 transcription repressor-2 AB021642 251371 19 1 glucocorticoid receptor DNA binding factor 1 102548 19q13.3 1 glucocorticoid-induced leucine zipper (GILZ) AF153603 75450 4 2 GTF2I AF036613 278589 7q11.23 4 GTF3 AF104923 21075 7q11.23 1 GTF3A D32257 75113 13q12.3-q13.1 2 GTFIIF NM_002096 68257 19p13.3 1 GTFIIH NM_005316 89578 11p15.1-p14 1 GTFIIIC AF054988 75782 2 2 hairy (Drosophila)-homolog (HRY) NM_005524 250666 3q28-q29 1 HCF-binding transcription factor Zhangfei AF039942 29417 11q14 1 heat shock factor binding protein 1 AF068754 250899 16 1 HMG box (SSRP1) M86737 79162 11q12 2 HMG protein 17 NM_005517 181163 1p36.1 3 HMG protein 17-like 3 NM_006353 236774 6p21.3 2 HMG-1 L08048 274472 22 5 HMG-box containing protein 1 AF182038 10882 7q31.1 2 homeobox HPX42B AF068006 125231 10q26 1 Id3 X73428 76884 1p36.13-p36.12 2 jun-B M29039 198951 19p13.2 2 KRAB zinc finger protein (RITA) AF272148 147644 19 1 KRAB-associated protein 1 AL360114 228059 5 4 Kruppel-like factor 2 AF123344 107740 19p13.13-p13.11 1 Kruppel-type zinc finger protein AJ245587 25275 3 LIM domain binding 2 (CLIM-1) AF047337 4980 4p16 1 mab-21 (C. elegans)-like 2 AF262032 251390 4q31 1 MafG U84249 252229 17q25 1 MAX M64240 42712 14q23 1 MEF2A U49020 2 MITF NM_000248 166017 3p14.1-p12.3 3 MORF-related gene X AF100620 173714 Xq22 2 Msx2 interacting nuclear target (MINT) AB023146 184245 1p36.33-1p36.11 1 mTR2R1 type II zinc finger S75970 1 neuronal specific transcription factor DAT1 AF258348 301914 12 1 NFAR-1(ILF3) AF167569 256583 19 1 NF-ATc/B U80917 96149 18q23 1 NFE2L2 NM_006164 155396 2q31 3 NFI U18759 35841 19p13.3 1 NF-κ-B transcription factor p65 M62399 75569 11q13 2 NGFI-A binding protein 1 AF045451 107474 2q32.3-q33 1 NR2F1 NM_005654 144630 5q14 4 NR3C1 NM_000176 75772 5q31 4 NRF1 L24123 83469 17q21.3 6 nuclear factor I/A AB037860 173933 1p31.3-p31.2 1 nuclear factor I/C 184771 19p13.3 1 nuclear factor κ-B2 (NF-KB2) U20816 73090 10q24 1 nuclear receptor 4A1 D85245 1119 12q13 2 nuclear receptor 4A2 NM_006186 82120 2q22-q23 2 nuclear receptor coactivator 1 AJ000881 74002 2p23 3 nuclear receptor coactivator 2 29131 8 1 nuclear receptor coactivator 4 AL162047 99908 10q11.2 3 nuclear receptor co-repressor 1 AF044209 144904 17p11.2 1 nuclear receptor co-repressor 2 AF125672 287994 12q24 2 nuclear receptor subfamily 1, group I, 3 83623 X 1 nuclear receptor subfamily 2, group C, 1 M29959 108301 12 1 OPTX2/Six6 AF031648 194756 14q22.3-q23 2 OTX2 AF298117 288655 14q21-q22 1 p300/CBP-associated factor NM_003884 199061 3p24 1 paired mesoderm homeo box 1 155606 1q24 1 paired-like homeodomain factor 2 (PITX2) AF048722 92282 4q25-q27 1 PAX interacting protein (PTIP) U80735 173854 7q36 2 PAX3 AF156931 1 PAX6 NM_000280 89506 11p13 5 PHD finger protein 1 NM_002636 166204 6p21.3 2 PNR photoreceptor-specific nuclear receptor AJ276674 187354 15q24 1 PR-domain zinc finger protein 5 (PRDM5) AF272897 192867 4q25-q26 1 prox1 AF100755 110803 14 2 putative homeodomain transcription factor 123637 1p13 1 R kappa B AK000617 95262 11q24-q25 2 RE1-silencing transcription factor (NRSF) NM_005612 227630 4 2 regulatory factor X, 5 AL050135 166891 1q21 1 requiem, apoptosis response zinc finger AF001433 13495 11q13 1 retinal homeobox protein RX AF115392 278957 18 1 retinoic acid receptor, β NM_000965 171495 3p24 2 retinoic acid receptor, γ L12060 1497 12q13 1 retinoid X receptor, α NM_002957 20084 9 2 sex comb on midleg homolog 1 AF149045 57475 1p34 1 similar to transcription factor BTF3a 93748 1 1 similar to zinc finger 11B 145473 1 similar to zinc finger 135 AK022648 31844 19 1 similar to zinc finger 184 AK000435 1 similar to zinc finger 33A 147334 1 similar to zinc finger protein 83 279935 2 Snf2-related CBP activator protein AB002307 87908 16 1 SOX10 XM_001073 44317 22q13.1 1 SOX8 AF226675 243678 16p13.3 1 SREBF2 NM_004599 108689 22q13 2 STAT-1 M97935 21486 2q32.2 2 STAT-3 L29277 321677 17q21 3 STAT-5B U48730 244613 17q11.2 1 STAT-6 NM_003153 181015 12q13 2 suppressin (DEAF-1)-related AF049459 6574 11p15.5 2 TAF172 AF038362 180930 10q22-q23 1 TAF2J NM_005644 82037 1 TALE homeobox protein Meis2e AF178948 283312 15 2 TAT-INTERACTIVE PROTEIN NM_012210 236218 9 1 TBP-interacting protein 184786 12q14 1 TCF12 (HEB, HTF4) M80627 21704 15q21 1 TCF4/SEF-2 M74719 326198 1 TFE3 AL161985 274184 Xp11.22 1 thyroid hormone receptor α X55068 1 TIP 120A AB020636 184786 12q14 4 TIRC 22340 19q13.4 3 transcription elongation factor A (SII)-like 1 M99701 95243 Xq22.1 1 transcription elongation factor B (SIII) NM_003197 182643 5q22-q35.2 1 transcription factor (SMIF gene) AJ275986 71414 3 1 transcription factor ETR101 M62831 737 19 5 transcription factor SL1 L39059 153022 16q24 3 transcription factor-like 5 AB012124 30696 20q13.3-qter 1 transcriptional activator hSNF2b D26156 78202 19 2 transcriptional adaptor 2 (ADA2)-like 125156 17q12-q21 1 transcriptional intermediary factor 1 γ AB029036 168005 1p13.1 2 TSC-22 AJ222700 114360 13q14 6 upstream regulatory element binding protein 1 AB002310 3383 Xp11.2 1 WSTF AF072810 194688 7q11.23 1 X-box binding protein 1 L13850 149923 22q12.1 1 YB-1 L28809 74497 1p34 4 YL-1 D43642 2430 1q21 1 zinc finger 162 (ZFM1) L49380 180677 11q13 4 zinc finger 5128 AF060503 296365 1 zinc finger protein AF020591 142634 19 1 zinc finger protein (LOC57862) NM_021188 7137 14q24.3 2 zinc finger protein (MBLL) AF061261 184340 13 1 zinc finger protein (ZF5128) AF060503 296365 1 zinc finger protein (ZNF-U69274) NM_014415 301956 1 zinc finger protein 117 M27879 133011 1 zinc finger protein 131 U09410 78743 5p12-p11 1 zinc finger protein 145 NM_006006 37096 11q23.1 1 zinc finger protein 148 AF039019 112180 3q21 1 zinc finger protein 161 D28118 6557 17 1 zinc finger protein 177 NM_003451 172979 19 1 zinc finger protein 193 NM_006299 96448 6p21.3 1 zinc finger protein 198 AF060181 109526 13q11-q12 1 zinc finger protein 207 AF046001 62112 17 1 zinc finger protein 216 AF062072 3776 9q13-q21 3 zinc finger protein 24 (KOX 17) AF016052 183593 18q12 1 zinc finger protein 255 AF067164 181696 19q13.2 2 zinc finger protein 275 NM_020636 9786 X 1 zinc finger protein 294 AB018257 288773 21q22.11 1 zinc finger protein 7 (KOX 4) M29580 2076 8q24 1 zinc finger protein 74 NM_003426 3057 22q11.21 1 zinc finger protein 76 NM_003427 29222 6p21.3-p21.2 1 zinc finger protein 84 (HPF2) M27878 9450 19 1 zinc finger protein Cezanne AJ293573 252731 1 3 zinc finger protein homologous to Zfp-36 M92843 1665 19q13.1 7 zinc finger protein with interaction domain NM_006626 3053 9 1 zinc finger protein ZNF180 AK024047 130683 19q13.2 1 zinc finger protein, subfamily 2A 1 AB046809 20047 14q22-q24 1 zinc finger similar to Hzf (mouse) AK024404 278422 12 2 zinc finger ZNF11B X68684 1 93% protein similarity to CHX10 (mouse) 1 93% protein similarity to SOX5 (mouse) 1 72% protein similarity to GIOT-1 19q 1 79% protein similarity to MAIL [mouse] 301183 3 1 |