Table 1 of Wistow, Mol Vis 2002; 8:185-195.


Table 1. The "top 25" clones in the un-normalized iris cDNA library bx

Clusters are arranged by abundance. This list is an edited detail from the output of the clustering procedure GRIST. Representative GenBank entries are shown, along with the appropriate Unigene, chromosomal location, and the number of ESTs identified.

Rank   Description                               Gene ID     UniGene   Chromosome      #
----   ---------------------------------------   ---------   -------   -------------   --
  1    clusterin (apolipoprotein J)              M64722      75106     8p21-p12        38
  2    elongation factor 1 α 1                   BC001412    181165    6q14            36
  3    glutathione peroxidase 3 (plasma)         D00632      172153    5q23            36
  4    ribosomal protein L3 (RPL3)               XM_009998   119598    22q12.1-q12.3   14
  5    GADPH                                     AF261085    169476    12p13           13
  6    opticin/oculoglycan                       XM_001780   241413    1q31            13
  7    prostaglandin D2 synthase                 XM_005431   8272      9q34.2-q34.3    12
  8    vimentin                                  BC000163    2064      10p13           12
  9    Serpin G1                                 XM_006339   151242    11q12-q13.1     10
 10    aldolase A                                X05236      273415    16q22-q24       10
 11    actin β                                   BC001301    288061    7p15-p12         9
 12    myosin regulatory light chain 2           XM_009501   9615      20               9
 13    ribosomal protein L4                      BC001365    286       15q              9
 14    Pmel (silver homolog)                     BC001414    95972     12q13-q14        8
 15    cofilin 1 (non-muscle)                    NM_005507   180370    11q13            8
 16    α-tubulin                                 AK026516    272897    2q               8
 17    gelsolin                                  NM_000177   290070    9q33             7
 18    ribosomal protein L13a                    BC000514                               7
 19    insulin-like growth factor binding        NM_001553   119206    4q12             7
         protein 7 (IGFBP7)
 20    tissue inhibitor of metalloproteinase 3   XM_009943   245188    22q12.3          6
         (TIMP3)
 21    prothymosin α                             BC003510    250655    2q35-q36         6
 22    MHC class II antigen γ chain              K01144      84298     5q32             6
 23    MHC class I lymphocyte antigen (HLA-A     AK027084    181244    6p21.3           6
         2402)
 24    ATPase, H+ transporting, lysosomal        M62762      76159     16p13.3          6
         (vacuolar proton pump) 16kD
 25    ubiquitin C                               AB009010    183704    12q24.3          6

Wistow, Mol Vis 2002; 8:185-195 <http://www.molvis.org/molvis/v8/a25/>
©2002 Molecular Vision <http://www.molvis.org/molvis/>
ISSN 1090-0535