These contrasts are listed in the sequential order of building up the final conclusion. Each row lists the question, the corresponding contrast that was tested, and the number of genes less than the q-value cutoff (< 0.001; except for *, in which those genes that have a q-value > 0.05 are included. In other words, these genes are also not differentially expressed in the retina. Also see Figure 1). The final 39 selected genes are listed in Appendix 7. In summary, this group of genes is regulated by Smarca4 and not differentially expressed in the retina. These genes are inside the black circle and outside the light-blue circle in Figure 1.