Table 1 of Wang, Mol Vis 2006; 12:852-857.


Table 1.

Primers designed for PCR amplifications of chosen SNPs. The names of corresponding genes are shown and their PCR primer sequences are shown in column 4. The length of PCR products (column 5) and corresponding positions of SNPs (column 1, 2 and 6) were also revealed. The denatured/annealing/extension temperatures are shown in the last column.

            Position
             on DNA                                             Length                  PCR conditions
 SNP ID      contig     Gene           Primer sequence           (bp)       Locus            (°C)
---------   --------   -------   ----------------------------   ------   ------------   --------------
rs1803344   15027690   Decorin   F: AGAAGAGCTTCCTGCTTCCC         279     Exon 9         94/61/72
                                 R: GAAAGGCATCCATGTGTGGT

rs3138268   15027704   Decorin   F: AGAAGAGCTTCCTGCTTCCC         279     Exon 9         94/61/72
                                 R: GAAAGGCATCCATGTGTGGT

rs2070985   15055254   Decorin   F: GCTGCCTGAGTCATCGTCTA         294     Untranslated   94/58/72
                                 R: CCAGGGGACACAGAAGAGAA

rs2070984   15055701   Decorin   F: CCATCACTTTATTGACAAGACG       276     Untranslated   94/53/72
                                 R: ACAAAATGCCCTGTTAGCAA

rs1802763   14980199   Lumican   F: TGGATACTATGAAAACTGACACACA    277     Exon 3         94/53/72
                                 R: TTGTTTTGAGCCAGTGTACTGAA

rs1802743   14980213   Lumican   F: TGGATACTATGAAAACTGACACACA    277     Exon 3         94/53/72
                                 R: TTGTTTTGAGCCAGTGTACTGAA

rs2300588   14982088   Lumican   F: GGCCACATAGTGAATTTTCCA        287     Intron         94/55/72
                                 R: GTTTTCTGGCCATGCTGAAT

rs7135740   14982193   Lumican   F: GGCCACATAGTGAATTTTCCA        287     Intron         94/55/72
                                 R: GTTTTCTGGCCATGCTGAAT

rs3741835   14987332   Lumican   F: GCTCAGAACTGTGGATTTGCT        479     Untranslated   94/68-62
                                 R: GAAGCAGGACTCAATTCTTGG                               (touchdown)/72

rs3741834   14987575   Lumican   F: GCTCAGAACTGTGGATTTGCT        479     Putative       94/68-62
                                 R: GAAGCAGGACTCAATTCTTGG                promoter       (touchdown)/72

rs3759223   14988974   Lumican   F: GCTCTTGTTAGAAAAACTCCACC      379     Putative       94/57/72
                                 R: TGAATGAGACTTTCTGACTCTCCA             promoter

rs3759222   14989144   Lumican   F: GCTCTTGTTAGAAAAACTCCACC      379     Putative       94/57/72
                                 R: TGAATGAGACTTTCTGACTCTCCA             promoter

rs1135866   14847832   DSPG3     F: CAATGACAGCAAATAAAATTGGA      266     Exon 5         94/52/72
                                 R: TGCTAGGTGATTTAAAAAGGATTG

rs1920748   14881247   DSPG3     F: AAGCAGTAGGATCCAAATCACA       243     Promoter       94/52/72
                                 R: TGAAGAAAGCAATTCAAGACTTC

rs1920751   14876487   DSPG3     F: TCATGAGTTCATCACCAAGG         481     Intron         94/63-56
                                 R: TGTTTGGGATCATGGCTTCT                                (touchdown)/72

rs1920752   14876173   DSPG3     F: TCATGAGTTCATCACCAAGG         481     Intron         94/63-56
                                 R: TGTTTGGGATCATGGCTTCT                                (touchdown)/72

Wang, Mol Vis 2006; 12:852-857 <http://www.molvis.org/molvis/v12/a96/>
©2006 Molecular Vision <http://www.molvis.org/molvis/>
ISSN 1090-0535