Table 1 of
Wang, Mol Vis 2006;
12:1223-1232.
Table 1.
PCR primers and tagged extension probes used for SNP detection.
Name SNP Primer Length Sequence 5'-3' ---------- --- ------- ------ --------------------------------------------- rs17880989 G/A Forward 89 GTTCTGGCGGGTGAGGAA Reverse TGTTGATGGACGCAGGCA Probe CGACTGTAGGTGCGTAACTCACCAAGTGATGGATGGATACCCAAT rs140638 Forward 165 AAAAGACATTTGTGCTGAGCC Reverse TTAATGCCATCTCCAATCCA Probe AGAGCGAGTGACGCATACTATGTGGCAAACATGCTGTATGTACCA rs6946698 Forward 141 CAACCTGAAAAAGGCTGTCA Reverse ACTTCCCAAAGCTATTCCCA Probe AGATAGAGTCGATGCCAGCTCAGGTTCACTTACACTGTTCTTGTA rs2942402 Forward 155 AAAAGGAAGTTTTTAATCCTGTGC Reverse AAACAAGCTTTTTCCACCAAC Probe GGCTATGATTCGCAATGCTTTTCAGATGAGAGTGAGCTCCCCACA rs13925 Forward 94 TTCTACTGGCGCGTGAGT Reverse CCTAGTCCTCAGGGCACTG Probe GACCTGGGTGTCGATACCTAGTGAGTTGAACCAGGTGGACCAAGT rs193328 Forward 151 TTAGCATCATCCAGTCATAGGA Reverse TTGGGGTACTTTGGGGTC Probe GTGATTCTGTACGTGTCGCCCTAGAGACGTTTACATTGGGCTTTA rs2518042 Forward 89 GGGGTGTCCAACTTCAAC Reverse GCGCTCACCTGGTTGCAG Probe AGGGTCTCTACGCTGACGATCAGGCTGCTGGAGATGATCCTCAAC rs2274756 Forward 99 GTGGACCGGATGTTCCCC Reverse TTAGTGTGGTGTCTCACGAAG Probe CGTGCCGCTCGTGATAGAATGACACGCACGACGTCTTCCAGTACC rs2518043 Forward 110 AACTTCAACCACAGGCTGC Reverse ATGAAGAACAGAAAGGAGAGGAG Probe ACGCACGTCCACGGTGATTTCCTCAACAAGCCAGGGCTCAAGTAC rs11591687 Forward 90 ACCTGGCCCACCCAAACC Reverse CTTTCAGCTGGTGGTTCTC Probe GGATGGCGTTCCGTCCTATTACACGTTTACCCCGGAGGAGCTGCT rs17153524 Forward 142 TGAGGGATCATTTGATACTGC Reverse ATAGCGTGTCCTATTGTTTCGA Probe AGCGATCTGCGAGACCGTATGTGAGATTTAGCACATATTTCTTCC rs1800440 Forward 129 TAACCCGGAGAACTTTGATC Reverse ATCTTAGAAAGTTCTTCGCCAAT Probe GCGGTAGGTTCCCGACATATTTCTTGGACAAGGACGGCCTCATCA rs3207905 Forward 150 TAAAAGTAAAGCTCTAGAGGCCG Reverse AATATGTCTTCTCTCTTCACACTGC Probe AGATAGAGTCGATGCCAGCTAAATTGGCAATAGAAGCCGGGTTCC rs17883861 Forward 130 TTCCCAAAATCCTGTCCAG Reverse AGAACTGACATCTTACCTGTCTTTAAA Probe GACCTGGGTGTCGATACCTACCATCGGCCCACAAACCCCAAAAGC rs10618 Forward 90 AAAGATGCAGGATTGGCC Reverse GTACTTGAGCCCTGGCTTG Probe AGGGTCTCTACGCTGACGATTCCATCGGGGTGTCCAACTTCAACC rs363830 Forward 131 ATCCTCTATAAAATGGTCAGATGACT Reverse TAGCTCCCACGGGTGTTG Probe GTGATTCTGTACGTGTCGCCATCAAACAGATGAGAATGAATGTCA rs17306779 Forward 141 TTTCACTACCTCTCAAGCACATT Reverse ATTGTATAAATAAGCAGAATCAATATGG Probe GGCTATGATTCGCAATGCTTTTCAGGTTCCGAGGAACAGAGCTGT rs17879973 Forward 143 TTTGTTGAATTGTTTCTTTCAGATC Reverse AAATTGTTGGTCCACCTTTCA Probe GCGGTAGGTTCCCGACATATTCATGCTTTTCAACCAGGCCCAGGT rs2287074 Forward 90 AGGGGCCTCTCCTGACAT Reverse AATACAATGTCCTGTTTGCAGAT Probe AGCGATCTGCGAGACCGTATACCTTGGCACCGGCCCCACCCCCAC rs2234926 Forward 112 AATGAATCCAGCTGCCCA Reverse AGCTGAGTCGAGCTTTGGT Probe CGTGCCGCTCGTGATAGAATATGTCAGTCATCCATAACTTACAGA rs523747 Forward 151 TTGGAAGCGAAGTGGAAG Reverse TTTCAAAGGAGGATAAAATTGC Probe GGATGGCGTTCCGTCCTATTTCAAGAGGCTCATACAAAACTCAGC rs1803571 Forward 125 TTCACCAAGACCTACACTGTTG Reverse TTTTCAGAGCCTTGGAGGA Probe AGAGCGAGTGACGCATACTAATGCACAGTGTTTCCCTGTTTATCC rs2229324 Forward 116 TTTCTTCAAAGATATCAATGAGTGC Reverse AATCAAGAGCAAAGCCGC Probe GACCTGGGTGTCGATACCTACACCCACGGCAAGTGCAGAAACACC rs17122498 Forward 151 ATATGGGGAAGGTGCTAAAAG Reverse AAGAGCAAGGAGAAGAAACACA Probe AGGGTCTCTACGCTGACGATAGGGCACCCAGGTACTCACATGGAA rs1805089 Forward 102 AGAGTCGAAATCTCTGGGG Reverse GTTCGCATGGCCTTCAGC Probe CGACTGTAGGTGCGTAACTCTCTCCAGAAGCAACTGTCCCTGCCC rs17881628 Forward 101 CCATCATGGCACCCTTTT Reverse TGTAGACTACTCGCCATAAAGTTG Probe AGAGCGAGTGACGCATACTAGGACACGGAGAATTTTGTGCTGCCC rs17576 Forward 90 TTCTCCCCCTTTCCCACA Reverse AGATGAATGGAAACTGGCAG Probe GGCTATGATTCGCAATGCTTCTCCTCGCCCCAGGACTCTACACCC rs8033037 Forward 142 ATCCAGACCCACAGCCAG Reverse ACTTCATTTTTAATAAGTGCCTTTCT Probe AGATAGAGTCGATGCCAGCTAGCCATCAGTGTTGACGCAACGCCC rs1042704 Forward 96 ATCATGGCACCCTTTTACC Reverse TGACTCACCCCCATAAAGTT Probe GCGGTAGGTTCCCGACATATGGACACGGAGAATTTTGTGCTGCCC rs12721427 Forward 144 ATGAAGGTTTTCTGCAACATG Reverse ATGGAAGCCACCATTGATG Probe GTGATTCTGTACGTGTCGCCTTGCGTCTACCCCAATCCAGCAAAC rs17099014 Forward 119 AAAAGAAAACATGTTCCTTCCG Reverse AGGGACGGCGCTACTCCA Probe AGCGATCTGCGAGACCGTATACCTTCCATGAGTTCTGTCGAGGTG rs17879165 Forward 96 AAAAGGTCTGACACTCTTAACTCTTT Reverse AAAGTCATGTGCTATCATTTTGG Probe CGTGCCGCTCGTGATAGAATCTGACCAGGTATGATGAATATAAAC rs7624750 Forward 147 TAATACTTTAGCCCTTTATAAGAATAGTATCTG Reverse AATCTTGTCAAAGTCTGGTGCT Probe GGATGGCGTTCCGTCCTATTGAGAAAATTAGAAAAGCCCTTCCTA rs12357625 Forward 103 AACTACCTCTCAGCCACAGTG Reverse CAGCTTCTATTGCTAATTTTGTGA Probe ACGCACGTCCACGGTGATTTACCTTTGGTTGCTCCTCCAGGTTCC |