Table 1 of Wang, Mol Vis 2006; 12:1223-1232.


Table 1.

PCR primers and tagged extension probes used for SNP detection.

   Name      SNP   Primer    Length                  Sequence 5'-3'
----------   ---   -------   ------   ---------------------------------------------
rs17880989   G/A   Forward     89     GTTCTGGCGGGTGAGGAA
                   Reverse            TGTTGATGGACGCAGGCA
                   Probe              CGACTGTAGGTGCGTAACTCACCAAGTGATGGATGGATACCCAAT
rs140638           Forward    165     AAAAGACATTTGTGCTGAGCC
                   Reverse            TTAATGCCATCTCCAATCCA
                   Probe              AGAGCGAGTGACGCATACTATGTGGCAAACATGCTGTATGTACCA
rs6946698          Forward    141     CAACCTGAAAAAGGCTGTCA
                   Reverse            ACTTCCCAAAGCTATTCCCA
                   Probe              AGATAGAGTCGATGCCAGCTCAGGTTCACTTACACTGTTCTTGTA
rs2942402          Forward    155     AAAAGGAAGTTTTTAATCCTGTGC
                   Reverse            AAACAAGCTTTTTCCACCAAC
                   Probe              GGCTATGATTCGCAATGCTTTTCAGATGAGAGTGAGCTCCCCACA
rs13925            Forward     94     TTCTACTGGCGCGTGAGT
                   Reverse            CCTAGTCCTCAGGGCACTG
                   Probe              GACCTGGGTGTCGATACCTAGTGAGTTGAACCAGGTGGACCAAGT
rs193328           Forward    151     TTAGCATCATCCAGTCATAGGA
                   Reverse            TTGGGGTACTTTGGGGTC
                   Probe              GTGATTCTGTACGTGTCGCCCTAGAGACGTTTACATTGGGCTTTA
rs2518042          Forward     89     GGGGTGTCCAACTTCAAC
                   Reverse            GCGCTCACCTGGTTGCAG
                   Probe              AGGGTCTCTACGCTGACGATCAGGCTGCTGGAGATGATCCTCAAC
rs2274756          Forward     99     GTGGACCGGATGTTCCCC
                   Reverse            TTAGTGTGGTGTCTCACGAAG
                   Probe              CGTGCCGCTCGTGATAGAATGACACGCACGACGTCTTCCAGTACC
rs2518043          Forward    110     AACTTCAACCACAGGCTGC
                   Reverse            ATGAAGAACAGAAAGGAGAGGAG
                   Probe              ACGCACGTCCACGGTGATTTCCTCAACAAGCCAGGGCTCAAGTAC
rs11591687         Forward     90     ACCTGGCCCACCCAAACC
                   Reverse            CTTTCAGCTGGTGGTTCTC
                   Probe              GGATGGCGTTCCGTCCTATTACACGTTTACCCCGGAGGAGCTGCT
rs17153524         Forward    142     TGAGGGATCATTTGATACTGC
                   Reverse            ATAGCGTGTCCTATTGTTTCGA
                   Probe              AGCGATCTGCGAGACCGTATGTGAGATTTAGCACATATTTCTTCC
rs1800440          Forward    129     TAACCCGGAGAACTTTGATC
                   Reverse            ATCTTAGAAAGTTCTTCGCCAAT
                   Probe              GCGGTAGGTTCCCGACATATTTCTTGGACAAGGACGGCCTCATCA
rs3207905          Forward    150     TAAAAGTAAAGCTCTAGAGGCCG
                   Reverse            AATATGTCTTCTCTCTTCACACTGC
                   Probe              AGATAGAGTCGATGCCAGCTAAATTGGCAATAGAAGCCGGGTTCC
rs17883861         Forward    130     TTCCCAAAATCCTGTCCAG
                   Reverse            AGAACTGACATCTTACCTGTCTTTAAA
                   Probe              GACCTGGGTGTCGATACCTACCATCGGCCCACAAACCCCAAAAGC
rs10618            Forward     90     AAAGATGCAGGATTGGCC
                   Reverse            GTACTTGAGCCCTGGCTTG
                   Probe              AGGGTCTCTACGCTGACGATTCCATCGGGGTGTCCAACTTCAACC
rs363830           Forward    131     ATCCTCTATAAAATGGTCAGATGACT
                   Reverse            TAGCTCCCACGGGTGTTG
                   Probe              GTGATTCTGTACGTGTCGCCATCAAACAGATGAGAATGAATGTCA
rs17306779         Forward    141     TTTCACTACCTCTCAAGCACATT
                   Reverse            ATTGTATAAATAAGCAGAATCAATATGG
                   Probe              GGCTATGATTCGCAATGCTTTTCAGGTTCCGAGGAACAGAGCTGT
rs17879973         Forward    143     TTTGTTGAATTGTTTCTTTCAGATC
                   Reverse            AAATTGTTGGTCCACCTTTCA
                   Probe              GCGGTAGGTTCCCGACATATTCATGCTTTTCAACCAGGCCCAGGT
rs2287074          Forward     90     AGGGGCCTCTCCTGACAT
                   Reverse            AATACAATGTCCTGTTTGCAGAT
                   Probe              AGCGATCTGCGAGACCGTATACCTTGGCACCGGCCCCACCCCCAC
rs2234926          Forward    112     AATGAATCCAGCTGCCCA
                   Reverse            AGCTGAGTCGAGCTTTGGT
                   Probe              CGTGCCGCTCGTGATAGAATATGTCAGTCATCCATAACTTACAGA
rs523747           Forward    151     TTGGAAGCGAAGTGGAAG
                   Reverse            TTTCAAAGGAGGATAAAATTGC
                   Probe              GGATGGCGTTCCGTCCTATTTCAAGAGGCTCATACAAAACTCAGC
rs1803571          Forward    125     TTCACCAAGACCTACACTGTTG
                   Reverse            TTTTCAGAGCCTTGGAGGA
                   Probe              AGAGCGAGTGACGCATACTAATGCACAGTGTTTCCCTGTTTATCC
rs2229324          Forward    116     TTTCTTCAAAGATATCAATGAGTGC
                   Reverse            AATCAAGAGCAAAGCCGC
                   Probe              GACCTGGGTGTCGATACCTACACCCACGGCAAGTGCAGAAACACC
rs17122498         Forward    151     ATATGGGGAAGGTGCTAAAAG
                   Reverse            AAGAGCAAGGAGAAGAAACACA
                   Probe              AGGGTCTCTACGCTGACGATAGGGCACCCAGGTACTCACATGGAA
rs1805089          Forward    102     AGAGTCGAAATCTCTGGGG
                   Reverse            GTTCGCATGGCCTTCAGC
                   Probe              CGACTGTAGGTGCGTAACTCTCTCCAGAAGCAACTGTCCCTGCCC
rs17881628         Forward    101     CCATCATGGCACCCTTTT
                   Reverse            TGTAGACTACTCGCCATAAAGTTG
                   Probe              AGAGCGAGTGACGCATACTAGGACACGGAGAATTTTGTGCTGCCC
rs17576            Forward     90     TTCTCCCCCTTTCCCACA
                   Reverse            AGATGAATGGAAACTGGCAG
                   Probe              GGCTATGATTCGCAATGCTTCTCCTCGCCCCAGGACTCTACACCC
rs8033037          Forward    142     ATCCAGACCCACAGCCAG
                   Reverse            ACTTCATTTTTAATAAGTGCCTTTCT
                   Probe              AGATAGAGTCGATGCCAGCTAGCCATCAGTGTTGACGCAACGCCC
rs1042704          Forward     96     ATCATGGCACCCTTTTACC
                   Reverse            TGACTCACCCCCATAAAGTT
                   Probe              GCGGTAGGTTCCCGACATATGGACACGGAGAATTTTGTGCTGCCC
rs12721427         Forward    144     ATGAAGGTTTTCTGCAACATG
                   Reverse            ATGGAAGCCACCATTGATG
                   Probe              GTGATTCTGTACGTGTCGCCTTGCGTCTACCCCAATCCAGCAAAC
rs17099014         Forward    119     AAAAGAAAACATGTTCCTTCCG
                   Reverse            AGGGACGGCGCTACTCCA
                   Probe              AGCGATCTGCGAGACCGTATACCTTCCATGAGTTCTGTCGAGGTG
rs17879165         Forward     96     AAAAGGTCTGACACTCTTAACTCTTT
                   Reverse            AAAGTCATGTGCTATCATTTTGG
                   Probe              CGTGCCGCTCGTGATAGAATCTGACCAGGTATGATGAATATAAAC
rs7624750          Forward    147     TAATACTTTAGCCCTTTATAAGAATAGTATCTG
                   Reverse            AATCTTGTCAAAGTCTGGTGCT
                   Probe              GGATGGCGTTCCGTCCTATTGAGAAAATTAGAAAAGCCCTTCCTA
rs12357625         Forward    103     AACTACCTCTCAGCCACAGTG
                   Reverse            CAGCTTCTATTGCTAATTTTGTGA
                   Probe              ACGCACGTCCACGGTGATTTACCTTTGGTTGCTCCTCCAGGTTCC

Wang, Mol Vis 2006; 12:1223-1232 <http://www.molvis.org/molvis/v12/a139/>
©2006 Molecular Vision <http://www.molvis.org/molvis/>
ISSN 1090-0535