Table 1 of
Rogojina, Mol Vis 2003;
9:482-496.Table 1 of
Rogojina, Mol Vis 2003;
9:482-496.
Table 1. Oligonucleotide primer sequences and amplification conditions
The oligonucleotide sequence for the primer pairs used for RT-PCR.
Product
Gene Accession Primer sequences (5'-3') Tm Size
number Title number (Forward and Reverse) primer (bp)
------ -------------------------------- ------------- ------------------------- ------ -------
1 Integrin, alpha 1 XM_032902 TGCCAGTGAGATTTCAGAGACC 62.1 117
GTGATTTCCTGTGTTTTCGTCG 62.1
2 Integrin, alpha 2 X17033/M28249 AACTCTTTGGATTTGCGTGTG 60.5 82
TGGCAGTCTCAGAATAGGCTTC 61.2
3 Integrin, alpha 3 XM_008432 ACTGTGAAGGCACGAGTGTG 60.3 103
TGCTGGTTCGGAGGAATAG 59.2
4 Integrin, alpha 4 XM_039011 AGAGAGACAATCAGTGGTTGG 57.2 168
TCAGTTCTGTTCGTAAATCAGG 57.4
5 Integrin alpha 5 X06256 TGCCTCCCTCACCATCTTC 61.6 171
TGCTTCTGCCAGTCCAGC 61.7
6 Integrin, alpha V NM_002210 TTGTTGCTACTGGCTGTTTTG 59.4 89
TCCCTTTCTTGTTCTTCTTGAG 58.1
7 Integrin, beta 1 XM_058357 CAAAGGAACAGCAGAGAAGC 58.2 168
ATTGAGTAAGACAGGTCCATAAGG 58.1
8 Connexin 43 NM_000165 TCTGAGTGCCTGAACTTGC 58 188
ACTGACAGCCACACCTTCC 59.1
9 CD81 NM_004356 ATGTGAAGCAGTTCTATGACCAG 58.8 100
TCAAGCGTCTCGTGGAAG 59
10 Syntaxin 16 NM_003763 ACAAGGCAGAACAGTATCAAAAG 58 117
ACGAGGACAACAATGAGCAC 59.1
11 Arg/Abl-interacting protein NM_003603 TCAAATAAGCCACAGCGTC 57.8 161
AACCAGCCGTCATCACAC 58.4
12 MHC class 1 related sequence B NM_005931 ACTTTCCCTCTGTTTCCTGAC 57.7 91
AGCAGTCGTGAGTTTGCC 57.8
13 Actinin, alpha 1 NM_001102 TGAGGAGTGGTTGCTGAATGAG 63 63
AACTTCTCTGCCAGGTGGTCC 63.2
14 Ras homolog, C NM_005167 ACCTGCCTCCTCATCGTCTTC 63.4 105
CACCTGCTTGCCGTCCAC 64.4
15 Agouti (mouse) related protein NM_001672 GTCTTCCTCTGCTTCTTCACTGC 62.3 149
ATCGGTTTGGATTTCTTGTTCAG 61.9
16 Activator of S phase kinase NM_006716 TTCACAAGAGCACCTAACTGTTCAG 62.3 53
CAGGAGGAGTATGGAATGGAGC 62.6
17 ATPase, Cu++ transporting, alpha NM_000052 AGAGTCCTTCAGAAATCAGCGTTC 62.7 136
AGGGAGCGTTTATCAGACAGTAGTG 62.5
18 Beclin 1 NM_003766 AGGATGATGTCCACAGAAAGTGC 63 99
AGTGACCTTCAGTCTTCGGCTG 63.5
19 CaM kinase, II gamma XM044349 CTTGTCTCCAGGAACTTCTCAGC 62.1 83
TTGTTGTTGCTCTGTGGCTTG 62.7
20 Cyclin-dependent kinase 8 NM_001260 AGGTGTGGCTTCTGTTTGACTATG 62.1 94
AACTGAACTGGCTTCTTGTTTGC 62.3
21 Actin, beta X00351 AAAGACCTGTACGCCAACAC 57 219
GTCATACTCCTGCTTGCTGAT 57.3
22 Glyceraldehyde-3-phosphate X01677 GTGAAGGTCGGAGTCAACG 58.8 113
dehydrogenase TGAGGTCAATGAAGGGGTC 59
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