Figure 3 of
Bowne, Mol Vis 2003;
9:129-137.
Figure 3. Alignment of human and mouse RP1L1 sequences
The mouse sequence lacks the polymorphic repeat and low complexity repeat found in human RP1L1. The doublecortin and RP1 regions of the proteins are designated with solid bars.
DC domain 1 --> human MNSTP---RNAQAP-----SHRECFLPSVARTPSVTKVTPAKKITFLKRGDPRFAGVRLA 52 mouse MNSTPGDTRDAPAPSHPAPSHRQCLLPSVAHTPSVTEVTPAKKITFLKRGDPQFAGVRLA 60 ***** *:* ** ***:*:*****:*****:***************:******* human VHQRAFKTFSALMDELSQRVPLSFGVRSVTTPRGLHSLSALEQLEDGGCYLCSDKKPPKT 112 mouse VHQRTFKTFSSLMDELSQRMPLSFGVRSVTTPRGLHGLSALEQLQDGGCYLCSDRKPPKT 120 ****:*****:********:****************.*******:*********:***** DC domain 1 --> human PSGPGRPQERNPTAQQLRDVEGQREAPGTSSSRKSLKTPRRILLIKNMDPRLQQTVVLSH 172 mouse SREPGRLQRKSPSAGQAQVFQGGHEAPETSYSWKGPVAPRRLTLVKNGDPRRQQTVVLSH 180 . *** *.:.*:* * : .:* :*** ** * *. :***: *:** *** ******** human RNTRNLAAFLGKASDLLRFPVKQLYTTSGKKVDSLQALLHSPSVLVCAGHEAFRTPAMKN 232 mouse KNTRSLAAFLGKASELLRFPVKQVYTTRGKKVDSLQTLLDGPSVLVCAGNEAFRCLEMEN 240 :***.*********:********:*** ********:**..********:**** *:* human ARRSEAETLSGLTSRNKNGSWGPKTKPSVIHSRSPPGSTPRLP----ERPGPSNPPVG-- 286 mouse DRGNRTRKLSSVTARSERGCWGPNAKQSVIHSRGRSGGKLRQVSLTSERSGLSDHPASGH 300 * ..:..**.:*:*.:.*.***::* ******. .*.. * **.* *: *.. RP1 domain --> human -----PAPGRHPQDTPAQSGPLVAGDDMKKKVRMNEDGSLSVEMKVRFHLVGEDTLLWSR 341 mouse RAWAGPALDRCPQDMPVPPGSLVAADDVEKKVCMNEDGSLSVEMKVRFQLLGEDTLRWSQ 360 ** .* *** *. .*.***.**::*** ***************:*:***** **: human RMGRASALTAASGEDPVLGEVDPLCCVWEGYPWGFSEPGVWGPRPCRVGCREVFGRGGQP 401 mouse RVGQASVFTAASGKGQDPREADRFCCRQEGYPWGILKPGAQGLGSYDGGCQEAFDVGQKS 420 *:*:**.:*****:. *.* :** ******: :**. * . **:*.*. * :. human GPKYEIWTNPLHASQGERVAARKRWGLAQHVRCSGLWGHGTAGRERCSQDSASPASSTGL 461 mouse QPSYDIWRNPLATPEGTGPTPRRRWGLAKLSGCKSHWRQEANHRKGHDKDNLSRVSTPRH 480 *.*:** *** :.:* :.*:*****: *.. * : : *: .:*. * .*:. human PEGSEPESSCCPRTPEDGVDSASPSAQIGAERKAGGSLGEDPGLCIDGAGLGGPEQGGRL 521 mouse PRSVQP-GSCCPWTPDGDTGSDTLHPVSSASSHNETDLESGEGLCLEDTGPHGSR----- 534 *.. :* .**** **:....* : . .*. : .* .. ***::.:* *.. human TPRARSEEGASSDSSASTGSHEGSSEWGGRPQGCPGKARAETSQQEASEGGDPASPALSL 581 mouse -PETQSTERALSDTSVSAKSREESSEGGGQLHRSSSQARVMASREQVTKGDNPCISTQSH 593 *.::* * * **:*.*: *:* *** **: : ...:**. :*:::.::*.:*. .: * human SSLRSDDLQAETQGQGTE--QATGAAVTREPLVLGLSCSWDSEGASSTPSTCTSSQQGQR 639 mouse LPLNHMGLQTEKYRQGTRGWEVSGEPELRLALVPGHSGSQDTQRDALPAPACAPAQWRQR 653 .*. .**:*. ***. :.:* . * .** * * * *:: : ...:*:.:* ** human RHRSRASAMSSPSSPGLGRVAPRGHPRHSHYRKDTHSPLDSSVTKQVPRPPERRRACQDG 699 mouse KQKRPASVECLPSVSVPYQVAQKGHARQDHYYRDTQSSLDT--ALQMPMPQEREQACPGS 711 ::: **. . ** . :** :**.*:.** :**:*.**: : *:* * **.:** .. human SVPRYSGSSSSTRTQASGNLRPPSSGSLPSQDLLGTSSATVTPAVHSDFVSGVSPHNAPS 759 mouse PAPQSPSNSPSAGNQASEDLRSPFSSSLDLQEPQATSKATTIAVSGSDCVC----HSTRS 767 ..*: ...*.*: .*** :**.* *.** *: .**.**. .. ** *. *.: * human AGWAGDAGSRTCSPAPIPPHTSDSCSKSGAASPGEEARDTPQPSSPLVLQVGRPEQGAVG 819 mouse VEPAGDTKCQAHSSTPTPAHRGELG------CLWDKAGTTPEPFSFSVLLDRCPEADDPR 821 . ***: .:: *.:* *.* .: . ::* **:* * ** ** . human PHRSHCCSQPGTQPAQEAQRGPSP----EASWLCGRYCPTPPRGRPCPQRRSSSCGSTGS 875 mouse TYHDCCCLQAVPSSPLAAPSGQTQTSISEACLGGSSFCPTPPKEQTCFGRESASNGST-S 880 .::. ** *. .... * * : **. . :*****: :.* *.*:* *** * human SHQSTARGPGGSPQEGTRQPGPTPSPGPNSGASRRSSASQGAGSRGLSEEKTLRSGGGPQ 935 mouse SGHSRADGFAGP---------------------RRTLLVKSPGVRGSLEE---------- 909 * :* * * .*. **: :..* ** ** human GQEEASGVSPSSLPRSSPEAVVREWLDNIPEEPILMTYELADETTGAAGGGLRGPEVDPG 995 mouse -READGGVTPSALPYASPDAVVREWLGNIPEKPVLMTYEMADENTEVPSDGPEGPKED-- 966 :* .**:**:** :**:*******.****:*:*****:***.* ....* .**: * human DDHSLEGLGEPAQAGQQSLEGDPGQDPEPEGALLGSSDTGPQSGEGVPQGAAPEGVSEAP 1055 mouse ---SLKVLGEPSQAKQQPPEGATNEHPEPAGVLSGPGSVCCRLGGDLHPDATSGERLKAP 1023 **: ****:** **. ** ..:.*** *.* *.... : * .: .*:. :** human AEAGADREAPAGCRVSLRALPGRVSASTQIMRALMGSKQGRPSSVPEVSRPMARRLSCSA 1115 mouse AEAGIGEGARVDHGVSLCALPTKVAASTQIMKALLGSKPGRPSSLPEVSSTVAQRLSSSA 1083 **** .. * .. *** *** :*:******:**:*** *****:**** .:*:***.** human GALITCLASLQLFEEDLGSPASKVRFKDSPWYQELLSISKDLWPGCDVGEDQLDSGLWEL 1175 mouse GAFIACLARLHFFDESLGPLDGKVRLEESPKYQEMLRLFQTLWPGSELWQGQLDFSLRKL 1143 **:*:*** *::*:*.**. .***:::** ***:* : : ****.:: :.*** .* :* human TWSQALPDLGSHAMTENFTPTSSSGVDISSGSGGSGESSVPCAMDGTLVTQGTELPLKTS 1235 mouse TSHQAL--LG----TEDFTPTSSSGVDVSSGSGGSGESSVPCVMDNTLAPEKRDLPLKIP 1197 * *** ** **:**********:**************.**.**..: :**** . human NQRPDSRTYESPGDLENQQQCCFPTFLNARACACATNEDEAERDSEEQRASSNLEQLAEN 1295 mouse SQRPDSRNQGYPELVGHSTVSSVSQVR-----ACATGGEETGKGGRKQTWGNAPEQSVHS 1252 .******. * : :. .... . ****. :*: :...:* .. ** ... human TVQEEVQLEETKEGTEGEGLQEEGVQLEETKTEEGLQEEGVQLEETKETEGEGQQEEEAQ 1355 mouse TMLEGDALSEETEGRVRERLQEN------------------------------------- 1275 *: * *.* .** * ***: human LEEIEETGGEGLQEEGVQLEEVKEGPEGGLQGEALEEGLKEEGLPEEGSVHGQELSEASS 1415 mouse -----SVHGKGLPEEGVR-------------------------------VCSQEMLAAGS 1299 .. *:** ****: * .**: *.* human PDGKGSQEDDPVQEEEAGRASASAEPCPAEGTEEPTEPPSHLSETDPSASESQSGSQLEP 1475 mouse QDGAGSPEDTRVPTDEAGADAASGGLWPLDGREEPTESPQHFSESNSRVREHQSAHKLEL 1359 ** ** ** * :*** :**. * :* *****.*.*:**::. . * **. :** human GLEKPPGATMMGQEHTQAQPTQGAAERSSSVACSAALDCDPIWVSVLLKKTEKAFLAHLA 1535 mouse GLEEVSRLDARGCKQACIKASSG------TMAHKGSLDPDPIWVSKLLKKIEKAFMAHLA 1413 ***: . * ::: :.:.* ::* ..:** ****** **** ****:**** human SAVAELRARWGLQDNDLLDQMAAELQQDVAQRLQDSTKRELQKLQGRAGRMVLEPPREAL 1595 mouse DATAELRARWDLHDNHLLDQMVTELEQDVGRRLQASTVMEVRKIQSRAGRMVPEPPREAL 1473 .*.*******.*:**.*****.:**:***.:*** ** *::*:*.****** ******* human TGELLLQTQQRRHRLRGLRNLSAFSERTLGLGPLSFTLEDEPALSTALGSQLGEEAEGEE 1655 mouse RGQASLQTEQRRRRLQGLRNFSAVP----GQGPLSLTLEDGPTLKTALGTKSGAEPAEDE 1529 *: ***:***:**:****:**.. * ****:**** *:*.****:: * *. :* human FCPCEACVRKKVSPMSPKATMGATRGPIKEAFDLQQILQRKRGEHTDGEAAEVXPGKT-- 1713 mouse FCPCEICLKKKRTPRFPKDAATVSGAPVRKAFDLQQILQSKKGGSSNREAMEVAPQRTGR 1589 ***** *::** :* ** : .: .*:::********* *:* :: ** ** * :* human HTDPTSTRTVQGAEGGLGPGLSQGPGVDEGEDGEGSQRLNRDKDPKLGEAEGDAMAQERE 1773 mouse MLSQEDLGTVQGADE------KQGLGVAEGEEGEGKQRLRAEEDPEILKTEG-------- 1635 . . *****: .** ** ***:***.***. ::**:: ::** human GKTHNSETSAGSELGEAEQEGEGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQSDGAE 1833 mouse ------------------------------------------------------------ human GIEAPEAEGEAQPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETP 1893 mouse -------SGCCAPEED-------------------------------------------- 1644 .* . **.: human EAEWEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEEAQEAEGQ 1953 mouse -----------------------------------------------EATEEDGEICIGT 1657 : :**:.: . * human AQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQEAE 2013 mouse AQ---------------------------------------------------------- 1659 ** human EEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAEGEVQE 2073 mouse -------------------ESQQLEGTEMGKEGTLP------------------------ 1676 *:*::** .** human AEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGIE 2133 mouse ----------------------------------QSFRDGGTLEAPARQGTHS------- 1695 . :.. :*** :* . human APEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEKEAQPELEGVEAPEAEGEAQPES 2193 mouse ------------------------------------------------------------ human EGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESGGETQGEKKGSP 2253 mouse ----------------------------------VEIQEASRERQQEVEGRHQDVKEDSP 1721 ** **. * * * *. *. *:.** human QVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSSSRASSWGNCWQKD 2313 mouse WVSSGESQGRVGSENTSLDQEGRLLNHHQRPGPQSHHTACSSRALSLDNSSQVS---QKG 1778 ** *:.*.. .**.:* *.* . * .*: . *. . * ..:*. . **. human SENDHVLGDTRSPDAKSTGTPHAERKATRMYPESSTSEQEEAPLGSRTPEQGASEGYDLQ 2373 mouse SDGDLTSGDLKCTKAKNSRVLHAEKKVPVMYPERSSSEQE-VPSSPRLPKQGKGE----- 1832 *:.* . ** :...**.: . ***:*.. **** *:**** .* ..* *:** .* human EDQALGSLAPTEAVGRADGFGQDDLDF 2400 mouse DEGSAGSLACTQVGGKVDGFGQDDLDF 1859 :: : **** *:. *:.********** |