Table 2 of
Wistow, Mol Vis 2002;
8:196-204.Table 2 of
Wistow, Mol Vis 2002;
8:196-204.
Table 2. The "top 30" of NEIBank retina ESTs
All ESTs represented by at least seven clones in the combined hd/he dataset. This list is an edited detail from the output of the clustering procedure GRIST. The most abundant novel transcript, retbindin, is shown in red. Representative GenBank entries are shown, along with the current Unigene cluster, chromosomal location and the number of ESTs identified.
Rank Description GenBank UniGene Chromosome # ---- ---------------------------------- --------- ------- ------------- -- 1 rhodopsin NM_000539 247565 3q21-q24 52 2 glutathione peroxidase 3 D00632 172153 5q23 33 3 elongation factor 1-α AK026650 181165 6q14 26 4 phosphodiesterase 6G (PDE6G) NM_002602 1857 17q25 25 5 ferritin, heavy BC000857 62954 11q13 25 6 GADPH AF261085 169476 12p13 21 7 clusterin (apolipoprotein J) M64722 75106 8p21-p12 19 8 creatine kinase, brain BC001190 173724 14q32 18 9 transferrin XM_002793 284176 11 17 10 S-antigen(arrestin) NM_000541 32721 2q37.1 13 11 tubulin, β 2 AK026167 251653 ? 11 12 ribosomal protein, large, P0 BC000087 73742 12 10 13 ribosomal protein L3 (RPL3) NM_000967 119598 22q12.1-q12.3 10 14 glutamine synthetase S70290 170171 1q31 9 15 prosaposin D00422 78575 10q21-q22 9 16 ribosomal protein S3A BC000204 77039 4q31.2-q31.3 9 17 α-transducin AC002077 51147 3p21 9 18 neural retina leucine zipper (NRL) XM_007297 89606 14q11.1-q11.2 9 19 ROM1 L07894 281564 11q13 9 20 vimentin XM_005833 2064 10p13 9 21 recoverin NM_002903 80539 17p13.1 8 22 ribosomal protein L13a BC000514 119122 19q13.3 8 23 aldolase A M11560 273415 16q22-q24 8 24 elongation factor-1-γ Z11531 2186 11 8 25 Retbindin AY028917 21162 19p13 8 26 unc119 (C.elegans) homolog NM_005148 81728 17q11.2 7 27 prostaglandin D2 synthase XM_005431 8272 9q34.2-q34.3 7 28 HSP-70 1A (HSPA1A) NM_005345 8997 6p21.3 7 29 ATPase, Na+/K+ transporting, a3 XM_008878 274371 19q13.2 7 30 triosephosphate isomerase XM_006972 83848 12p13 7 |