Figure 4 of
Cai, Mol Vis 1999;
5:3.Figure 4 of
Cai, Mol Vis 1999;
5:3.
Figure 4. Differentially expressed clone 2 sequence, aligned with mouse and rat EST sequences.
Clone 2 (partial) nucleotide sequence, consisting of 322 nucleotides (AF070940), was aligned with the 465 nucleotide sequence of a mouse EST (mouse EST AA198287) and with the 359 nucleotide sequence of a rat EST (rat EST AI072094). Nucleotide numbers of the respective sequences are shown on the right of the figure. The putative stop codon, TAA, in the clone 2 sequence is marked in red. The polyadenylation signal, AATAAA, is marked in green. Gaps in the sequences introduced to maximize alignment are indicated with dashes. Nucleotide mismatches are in lower case.
10 20 30 40 50 60
. . . . . .
clone 2 AAGCTAATAAAAAATATCGTTCAGCAACAAAAAAAAAAAAAAGGAAACGTTCTAAGGTGC 60
m EST GTCGCTCTCTTTGTTGCTTATGCCGATAAGCATGGGTTT 39
clone 2 ACTTTCCTCGTTGCGGTATTTGTCGCTCTCTTTGTTGCTTATGCGGATAAGCATGGGTTT 120
m EST -CTTGGTGCAGTGTGAGTTTTTATATATGTATAAATCTATATATAAtCTATACATATATA 98
clone 2 cCTTGGTGCAGTGTGAGTTTTTATATATGTATAAATCTATATATAA-CTATACATATATA 180
m EST T--ACAAGCCAGTGTATAATGTTATAAAATGGAATTCTAAGTTATTAATTGTAATCTGTA 156
clone 2 TatACAAGCCAGTGTATAATGTTATAAAATGGAATTCTAAGTTATTAATTGTAATCTGTA 240
r EST TGGAATTCTAAGTTATTAATTGTAATCTGTA 31
m EST GGTGACCTCGGTATTAACGTGgAAAACAtTCAAAAATcAAAG--CAAAAAAA-------G 207
clone 2 GGTGACCTCGGTATTAACGTGaAAAACAcTCAAAAATgAAAGacCAAAAAAAaaaaaaaG 300
r EST GGTGACCTCGGTATTAACGTGaAAAACAcTCAAAAATcAAAG--CAAAAAAAaa-----G 84
m EST GACAAAATGGAAAAAAaTTAGACTATTCGCACATTGTACGTATCGGGTTTtATAGCTGAA 267
clone 2 GACAAAATGGAAAAAA-TTAGACT 322
r EST GACAAAATGGAAAAAA-TTAGACTATTCGCGCATTGTACGTATCGGGTTTcATAGCTGAA 143
m EST ATCTACTGTattCTGGGGAGGtACCCTGCCGAcCCCTGGtCCCCCGGCCTGCGGCTGTTC 327
r EST ATCTACTGTtcgCTGGGGAGGaACCCTGCGGAtCCCTGG-CCCCCGGCCTGCGGCTGTTC 202
m EST TCCAAAGCgGTCCAGGCTGCGCTGaAGCACGAATAgAGCGTCGGGTGAGtGAGCCAGAAG 387
r EST TCCAAAGCtGTCCAGGCTGCGCTGgAGCACGAATAaAGCGTCGGGTGAGcGAGCCAGAAG 262
m EST CTCCcGGACTCGCCAGCgAGCGACGCTGCGCAcAgCTGCTCACTTTGTGCTTTCCTTTGC 447
r EST CTCCgGGACTCGCCAGCaAGCGACGCTGCGCAgAaCTGCTCACTTTGTGCTTTCCTTTGC 322
m EST ATAGGTATGAGCTAGAAA 465
r EST ATAGGTATGAGCTAGAAATAAATGTTATTTTCTAAAT-polyA 359
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