Table 4 of Sergeev, Mol Vis 4:9, 1998.


Table 4. PHD and NNSSP secondary structure predictions for terminal extensions of ßB2-crystallin from mouse lens

                                 PHD                            NNSSP
                  ---------------------------------   -------------------------
        Residue   Predicted probability   Preferred                   Preferred
                  Helix   Sheet   Loop      state     Helix   Sheet     State
        -------   -----   -----   ----    ---------   -----   -----   ---------
N-arm    M-16       0       0       9         L         6       1
         A-15       0       0       9         L         6       1
         S-14       0       0       7         L         4       0
         D-13       2       0       4         -         3       0
         H-12       5       0       6         -         3       0
         Q-11       3       0       6         -         3       0
         T-10       3       0       7         L         2       1
         Q-9        2       0       8         L         2       0
         A-8        1       0       9         L         1       0
         G-7        0       0       9         L         0       0
         K-6        0       0       9         L         0       0
         P-5        0       0       9         L         0       0
         Q-4        0       0       9         L         0       1
         P-3        0       0       9         L         1       1
         L-2        0       0       9         L         1       1
         N-1        0       0       9         L         0       1

C-arm    Q174       3       0       5         -         2       4
         W175       4       0       5         -         2       4
         H176       3       1       5         -         1       1
         Q177       2       1       5         -         1       1
         R178       1       2       6         -         1       1
         G179       0       1       8         L         1       1
         A180       0       2       7         L         1       2
         F181       0       2       7         L         0       1
         H182       0       3       6         -         0       1
         P183       0       1       8         L         0       1
         S184       0       0       8         L         0       0
         S185       0       0       9         L         0       1

From left to right: Residue: residue and its relative position in the terminal extension (negative numbers) with residue 1 corresponding to the first residue of the proposed structural domain, located after multiple sequence alignment [6]. Predicted probability: a probability of a particular state (helix, sheet, or loop) as predicted by the PHD program. Preferred state: selected by the PHD program. NNSSP: helices, sheets, and preferred state as estimated by the NNSSP program. "L" is a coil residue conformation.


Sergeev, Mol Vis 1998; 4:9 <http://www.molvis.org/molvis/v4/p9>
©1998 Molecular Vision <http://www.molvis.org/molvis/>
ISSN 1090-0535