Table 4 of
Sergeev, Mol Vis 4:9, 1998.Table 4 of
Sergeev, Mol Vis 4:9, 1998.
Table 4. PHD and NNSSP secondary structure predictions for terminal extensions of ßB2-crystallin from mouse lens
PHD NNSSP
--------------------------------- -------------------------
Residue Predicted probability Preferred Preferred
Helix Sheet Loop state Helix Sheet State
------- ----- ----- ---- --------- ----- ----- ---------
N-arm M-16 0 0 9 L 6 1
A-15 0 0 9 L 6 1
S-14 0 0 7 L 4 0
D-13 2 0 4 - 3 0
H-12 5 0 6 - 3 0
Q-11 3 0 6 - 3 0
T-10 3 0 7 L 2 1
Q-9 2 0 8 L 2 0
A-8 1 0 9 L 1 0
G-7 0 0 9 L 0 0
K-6 0 0 9 L 0 0
P-5 0 0 9 L 0 0
Q-4 0 0 9 L 0 1
P-3 0 0 9 L 1 1
L-2 0 0 9 L 1 1
N-1 0 0 9 L 0 1
C-arm Q174 3 0 5 - 2 4
W175 4 0 5 - 2 4
H176 3 1 5 - 1 1
Q177 2 1 5 - 1 1
R178 1 2 6 - 1 1
G179 0 1 8 L 1 1
A180 0 2 7 L 1 2
F181 0 2 7 L 0 1
H182 0 3 6 - 0 1
P183 0 1 8 L 0 1
S184 0 0 8 L 0 0
S185 0 0 9 L 0 1
|
From left to right: Residue: residue and its relative position in the terminal extension (negative numbers) with residue 1 corresponding to the first residue of the proposed structural domain, located after multiple sequence alignment [6]. Predicted probability: a probability of a particular state (helix, sheet, or loop) as predicted by the PHD program. Preferred state: selected by the PHD program. NNSSP: helices, sheets, and preferred state as estimated by the NNSSP program. "L" is a coil residue conformation.