Table 2 of
Sun, Mol Vis 2025; 31:33-43.
Table 2. Signicant data mining genes and genetic mutational analysis.
Gene | Exon | Location in the gene | cDNA change | SNP ID number | CytoBand | Highest- MAF | P value | Previously reported | Prediction (SIFT/ polyphen2/Mutaton Taster) |
---|---|---|---|---|---|---|---|---|---|
ZNF717 | Exon5 | chr3–75787486 | c.1288G>A | rs77649281 | 3p12.3 | 0.015 | <0.001 | / | T/B/N |
Exon5 | chr3–75786252 | c.2522C>A | rs140641854 | 3p12.3 | 0.003 | <0.001 | / | D/P/D | |
IHH | UTR3 | chr2–219919754 | c.*175C>G | rs3099 | 2q35 | 0.421 | <0.001 | Yes | −/−/- |
SEC22B | intron | chr1–145112288 145,112,288 | N-N-G-GCA | - | 1q21.1 | 0.000 | <0.001 | / | −/−/- |
IGSF3 | Exon3 | chr1–117156585 | c.634C>T | rs139013364 | 1p13.1 | 0.001 | <0.001 | / | −/−/D |
Exon3 | chr1–117156459 | c.760G>A | rs61786651 | 1p13.1 | 0.000 | <0.001 | / | D/P/D | |
HYDIN | Exon15 | chr16–71101200 | c.2068A>G | rs10744982 | 16q22.2 | 0.002 | <0.001 | / | T/D/D |
Exon22 | chr16–71054178 | c.3229A>G | rs6416709 | 16q22.2 | 0.004 | <0.001 | / | T/B/N | |
Exon40 | chr16–70989335 | c.6259C>T | rs1774541 | 16q22.2 | 0.004 | <0.001 | / | D/P/D | |
Exon44 | chr16–70972620 | c.6892C>G | rs1774360 | 16q22.2 | 0.000 | <0.001 | / | D/P/D | |
GGT1 | Exon14 | chr22–25024072 | c.1361G>T | rs199681469 | 22q11.23 | 0.000 | <0.001 | / | D/B/D |
Exon12 | chr22–25023441 | c.1063C>T | rs200419006 | 22q11.23 | 0.001 | <0.001 | / | D/P/D | |
FRG1 | Exon7 | chr4–190881969 | c.604G>A | rs6846627 | 4q35.2 | 0.000 | <0.001 | / | T/B/D |
CDC27 | Exon12 | chr17–45214699 | c.1441A>G | rs62075623 | 17q21.32 | 0.000 | <0.001 | / | D/P/D |
LRRC37A3 | UTR5 | chr17–62893457 | c.-82A>T | rs11650755 | 17q24.1 | 0.376 | <0.001 | / | −/−/- |
CTAGE4 | exon1 | chr7–143882864 | c.2268T>C | rs200691220 | 7q35 | 0.048 | <0.001 | / | −/−/- |
exon1 | chr7–143882889 | c.2293C>T | rs201820489 | 7q35 | 0.043 | <0.001 | / | T/B/N | |
exon1 | chr7–143882922 | c.2326A>G | rs200196623 | 7q35 | 0.085 | <0.001 | / | T/B/N | |
ADAMTS7 | Exon19 | chr15–79058307 | c.3946T>A | rs200436984 | 15q25.1 | 0.025 | <0.001 | / | T/B/N |