Table 2 of Akhtar, Mol Vis 2025; 31:206-219.


Table 2. List of variants identified in current study in CNG channels associated retinal dystrophies.

Sr. No. Family ID Accession number Gene Zygosity Variant Exon Nucleotide change Protein change dbSNP ID ClinVar ID/ Classification gnomAD Variant Interpretation (Codes Met) Curated variant classification
1 RD001 (NM_001298.3) CNGA3 Homo CHR2:99013274C>A 8 c.1641C>A p.(Phe547Leu) rs104893617 9478/P/LP 0.000159 PM2, PP1, PP2, PP3, PP4 Pathogenic
2 RD004 (NM_001298.3) CNGA3 Homo CHR2:99012433G>T 8 c.800G>T p.(Gly267Val) Novel NA NA PM2, PP1, PP2, PP3, PP4 Pathogenic
3 RD021 (NM_019098.5) CNGB3 Homo CHR8:87656004A>G 10 c.1153T>C p.(Trp385Arg) Novel NA NA PM2, PP1, PP2, PP3, PP4 Pathogenic
4 RD025 (NM_001298.3) CNGA3 Homo CHR2:99012588T>C 8 c.955T>C p.(Cys319Arg) rs753625117 191,120/P/LP 1.77E-05 PM2, PP1, PP2, PP3, PP4 Pathogenic
5 RD028 (NM_001298.3) CNGA3 Homo CHR2:99013274C>A 8 c.1641C>A p.(Phe547Leu) rs104893617 9478/P/LP 0.000159 PM2, PP1, PP2, PP3, PP4 Pathogenic
6 RD031 (NM_001298.3) CNGA3 Homo CHR2:99013443C>T 8 c.1810C>T p.(Gln604*) rs753692812 444,512/LP 3.99E-06 PM2, PVS1, PP1, PP4 Pathogenic
7 RD053 (NM_000087.5) CNGA1 Homo CHR4:47938866T>A 11 c.1633A>T p.(Ile545Phe) rs752905054 NA 2.41E-05 PM2, PP1, PP2, PP3, PP4 Pathogenic
8 RP125 (NM_001298.3) CNGA3 Homo CHR2:99012460A>G 8 c.827A>G p.(Asn276Ser) rs199474697 156,335/LP/VUS NA PM2, PP1, PP2, PP3, PP4 Pathogenic