Table 2 of McClements, Mol Vis 2021; 27:233-242.

Table 2. Nucleotide frequencies at positions −9 to −1 relative to the start codon for 38 genes with retina-specific functions.

Nucleotide frequencies for 38 retina-specific genes following MFE predictions
  -9 -8 -7 -6 -5 -4 -3 -2 -1
A 34 18 32 29 37 24 74 37 18
G 21 21 16 42 18 39 18 13 29
C 21 42 39 26 24 29 5 42 47
T 24 18 13 3 21 8 3 8 5
Preference: A C C G A G A C C
Nucleotide frequencies previously identified for 32,526 human genes
A 20 20 21 21 19 24 46 29 19
G 35 29 28 39 30 26 37 20 28
C 27 33 32 23 32 38 10 38 45
T 18 18 19 17 19 12 7 13 8
Preference: G C C G C C A C C
                   
Chi-square: 0.0004 0.1636 0.0007 <0.00001 0.0002 0.0226 <0.00001 0.0303 0.6615

The nucleotide frequencies for 38 genes listed in Appendix 3 with known retina-specific functions compared to the nucleotide frequencies of 32,526 human genes previously published [6].

McClements, Mol Vis 2021; 27:233-242. http://www.molvis.org/molvis/v27/233

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