Table 3 of Cai, Mol Vis 2020; 26:483-493.

Table 3. Selected genes with differential methylation and relative location of these CpG sites in the genes.

Probe ID Gene Description ∆β in array p in array ∆β in validation p in validation Location in gene
cg13078798 TGFBR3 Transforming growth factor, β receptor III 0.54 2.17E-07 −0.08 0.376 Body
cg16055869 CXCL5 Chemokine (C-X-C motif) ligand 5 0.24 4.58E-06 0.08 0.138 TSS200
cg21951797 TNXB Tenascin XB 0.47 7.13E-06 0.06 0.002 Body
cg07139946 −0.18 1.42E-06 0.17 0.16
cg15724328 ANGPT1 Angiopoietin 1 −0.31 5.76E-06 N/A*   Body
cg17982478 PLEKHA7 Pleckstrin homology domain contaning, family A member 7 0.36 5.35E-07 0.005 0.42 TSS1500
cg04827020 THBS1 Thrombospondin 1 0.27 1.74E-06 N/A*   Body
cg16933229 PITX2 Paired–like homeodomain 2 0.6 3.72E-07 N/A*    
cg03133735 0.6 1.17E-07 0.02 0.001  
cg01733176 0.38 1.34E-08 0.1 0.06  
cg26500914 DAXX Death-domain associated protein 0.5 4.11E-06 0.32 0.08 Body
cg24498636 0.48 2.26E-06 0.32 0.08
cg05431670 0.28 2.37E-09 0.07 0.001 TSS200
cg16277169 TBX3 T-Box 3 −0.32 1.10E-07 −0.56 0.04 Body
cg18161956 −0.44 4.25E-08 −0.14 0.734
cg09413529 −0.49 7.55E-06 −0.82 0.001
cg11246938 −0.39 5.36E-08 −0.19 0.051
cg09053536 −0.51 7.33E-06 −0.89 0.001
cg13661397 NET1 Neuroepithelial cell transforming 1 0.47 8.37E-10 −0.00043 0.861 TSS200

* Not available due to shortage of sites for methylation sensitive restriction enzyme. TSS200: 200 base pairs upstream of the transcription start site; TSS1500: 1500 base pairs upstream of the transcription start site.

Cai, Mol Vis 2020; 26:483-493. http://www.molvis.org/molvis/v26/483

©2020 Molecular Vision http://www.molvis.org/molvis/

ISSN 1090-0535