Molecular Vision: Musolf, Mol Vis 2018; 24:29-42. Table 2

Table 2. SNPs with genome-wide suggestive evidence of linkage from multipoint analysis.

CHR	HLOD	rsID	POS	MAF	FUNCTION	GENE
9q33.1	3.14	rs1158810	121,809,519	0.4631	intergenic	TLR4,BRINP1
9q33.1	3.07	rs1009470	122,289,187	0.4688	intergenic	BRINP1,MIR147A
9q33.1	2.97	rs16909449	122,861,297	0.4799	intergenic	BRINP1,MIR147A
9q33.2	2.78	rs17611	123,769,200	0.4927	exonic	C5
9q33.1	2.71	rs1927321	121,066,417	0.4765	intergenic	TLR4,BRINP1
9q33.2	2.67	rs7871736	124,650,611	0.4052	intronic	TTLL11
9q33.3	2.48	rs4838334	128,843,105	0.4248	intergenic	PBX3,LOC101929116
10q26.11	2.35	rs7099523	120,493,700	0.4998	intronic	CACUL1
10q26.12	2.33	rs746832	122,348,065	0.4615	ncRNA_intronic	MIR5694
10q26.11	2.31	rs185020036	120,095,773	0.0061	exonic	FAM204A
9q33.2	2.30	rs1536929	125,391,369	0.4291	exonic	OR1B1
9q33.3	2.24	rs10987504	129,613,454	0.466	intergenic	ZBTB43),ZBTB34
10q26.11	2.24	rs1419138	119,731,281	0.4295	intergenic	EMX2,RAB11FIP2
10q26.12	2.22	rs2289337	122,649,482	0.1519	exonic	WDR11
10q26.11	2.14	rs1925283	119,533,345	0.4789	intergenic	EMX2),RAB11FIP2
10q26.12	2.10	rs4752384	121,871,353	0.3317	intergenic	MIR4682,PPAPDC1A
10q26.13	2.07	rs11598592	123,043,389	0.4611	intergenic	MIR5694),FGFR2
9q33.3	2.05	rs4130590	130,107,964	0.4424	intronic	GARNL3
9q33.1	2.02	rs10817896	119,232,655	0.4729	intronic	ASTN2
10q26.13	2.00	rs2672592	124,230,750	0.4857	intronic	HTRA1
9q34.11	1.93	rs2275260	131,285,955	0.4639	exonic	GLE1
10q26.13	1.89	rs2981579	123,337,335	0.4623	intronic	FGFR2

Table displaying the genome-wide significant and suggestive signals from the multipoint linkage analysis sorted by HLOD. The genome-wide significance threshold is 3.3 and the genome-wide suggestive threshold is 1.9, as recommended by Lander and Kruglyak. CHR=chromosomal region, HLOD=heterogeneity LOD score, POS=position in basepairs of each SNP, MAF=minor allele frequency as calculated from the data set, FUNCTION=functional annotation of the SNP, GENE=genic location of the SNP or closest genes in the case of intergenic SNPs. Annotations performed by ANNOVAR.