Figure 2. Genome-wide collapsed haplotype pattern variant two-point HLOD scores. Plot showing the genome-wide collapsed haplotype pattern (CHP) variant two-point heterogeneity logarithm of the odds (HLOD) scores produced by SEQLinkage and MERLIN. The lines at 1.9 and 3.3 represent the suggestive and significant thresholds, respectively, recommended by Lander and Kruglyak.