Table 1 of
Han, Mol Vis 2017; 23:649-659.
Table 1. Quality control metrics of next generation sequencing runs.
Patient | Total aligned reads | Targeted aligned reads | Targeted aligned bases (bp) | Mean coverage | >=Q30 base pair | Median fragment length (bp) |
---|---|---|---|---|---|---|
P1 | 12,248,376 | 8,305,029 | 887,342,110 | 74.3× | 91.8% | 308 |
P2 | 12,514,079 | 8,734,402 | 927,395,332 | 77.6× | 92.5% | 279 |
P3 | 16,477,550 | 11,991,255 | 1,235,952,620 | 103.5× | 93.3% | 256 |
P4 | 14,490,845 | 10,323,509 | 1,074,284,233 | 89.9× | 92.9% | 267 |
P5 | 19,383,130 | 13,549,987 | 1,411,822,212 | 118.2× | 88.1% | 271 |
P6 | 14,609,502 | 10,076,663 | 1,039,201,848 | 87.0× | 94.9% | 279 |
P7 | 13,891,487 | 9,961,705 | 1,026,703,521 | 85.9× | 90.0% | 259 |
P8 | 13,675,583 | 10,242,904 | 1,022,195,973 | 85.6× | 90.9% | 225 |
P9 | 17,416,972 | 13,005,976 | 1,312,819,546 | 109.9× | 93.6% | 233 |
Average | 14,967,503 | 10,687,937 | 1,104,190,822 | 92.4× | 92.0% | 264 |