Table 1 of Han, Mol Vis 2017; 23:649-659.


Table 1. Quality control metrics of next generation sequencing runs.

Patient Total aligned reads Targeted aligned reads Targeted aligned bases (bp) Mean coverage >=Q30 base pair Median fragment length (bp)
P1 12,248,376 8,305,029 887,342,110 74.3× 91.8% 308
P2 12,514,079 8,734,402 927,395,332 77.6× 92.5% 279
P3 16,477,550 11,991,255 1,235,952,620 103.5× 93.3% 256
P4 14,490,845 10,323,509 1,074,284,233 89.9× 92.9% 267
P5 19,383,130 13,549,987 1,411,822,212 118.2× 88.1% 271
P6 14,609,502 10,076,663 1,039,201,848 87.0× 94.9% 279
P7 13,891,487 9,961,705 1,026,703,521 85.9× 90.0% 259
P8 13,675,583 10,242,904 1,022,195,973 85.6× 90.9% 225
P9 17,416,972 13,005,976 1,312,819,546 109.9× 93.6% 233
Average 14,967,503 10,687,937 1,104,190,822 92.4× 92.0% 264