Table 3 of
Liao, Mol Vis 2017; 23:318-333.
Table 3. The rs10490924-T allele is associated with low levels (negative effect sizes) of ARMS2 gene expression in most tissues.
| Tissue | P-Value | Effect Size | Expression (Mean RPKM) | Number Samples |
|---|---|---|---|---|
| Brain - Anterior cingulate cortex (BA24) | 0.95 | 0.012 | N/A | 72 |
| Muscle - Skeletal | 0.98 | 0.0017 | 0 | 361 |
| Brain - Caudate (basal ganglia) | 0.93 | −0.015 | 0.057 | 100 |
| Nerve - Tibial | 0.71 | −0.04 | 0.059 | 256 |
| Liver | 0.74 | −0.048 | 0.099 | 97 |
| Adipose - Subcutaneous | 0.49 | −0.056 | 0.113 | 298 |
| Brain - Frontal Cortex (BA9) | 0.76 | −0.063 | 0.079 | 92 |
| Breast - Mammary Tissue | 0.51 | −0.082 | 0.07 | 183 |
| Colon - Transverse | 0.18 | −0.12 | 0.054 | 169 |
| Stomach | 0.1 | −0.15 | 0.036 | 170 |
| Thyroid | 0.086 | −0.16 | 0.051 | 278 |
| Pituitary | 0.33 | −0.16 | 0.382 | 87 |
| Brain - Putamen (basal ganglia) | 0.37 | −0.17 | 0.06 | 82 |
| Heart - Left Ventricle | 0.075 | −0.18 | 0.055 | 190 |
| Lung | 0.098 | −0.18 | 0.033 | 278 |
| Prostate | 0.35 | −0.19 | 0.082 | 87 |
| Adipose - Visceral (Omentum) | 0.022 | −0.2 | 0.116 | 185 |
| Esophagus - Mucosa | 0.069 | −0.2 | 0.136 | 241 |
| Brain - Cortex | 0.24 | −0.23 | 0.084 | 96 |
| Brain - Hippocampus | 0.23 | −0.24 | 0.075 | 81 |
| Vagina | 0.088 | −0.25 | N/A | 79 |
| Heart - Atrial Appendage | 0.042 | −0.27 | 0.022 | 159 |
| Artery - Tibial | 0.00041 | −0.35 | 0.099 | 285 |
| Ovary | 0.014 | −0.35 | 0.472 | 85 |
| Colon - Sigmoid | 0.005 | −0.4 | 0.152 | 124 |
| Skin - Not Sun Exposed (Suprapubic) | 0.0003 | −0.41 | 0.115 | 196 |
| Esophagus - Muscularis | 0.000063 | −0.45 | 0.136 | 218 |
| Small Intestine - Terminal Ileum | 0.0079 | −0.45 | 0.044 | 77 |
| Skin - Sun Exposed (Lower leg) | 7.00E-07 | −0.46 | N/A | 302 |
| Artery - Aorta | 0.00007 | −0.47 | 0.109 | 197 |
| Uterus | 0.0049 | −0.5 | 0.184 | 70 |
| Brain - Nucleus accumbens (basal ganglia) | 0.003 | −0.54 | 0.05 | 93 |
| Artery - Coronary | 5.50E-06 | −0.56 | 0.094 | 118 |
| Brain - Hypothalamus | 0.00019 | −0.67 | 0.089 | 81 |
| Testis | 7.50E-24 | −0.79 | 3.012 | 157 |