Table 1 of Liao, Mol Vis 2017; 23:318-333.
SNP | Chr 10 position (GPCh37) | REF/ALT Allele | r2 LDlink/ HaploReg | D' LDlink/ HaploReg | AMD References |
---|---|---|---|---|---|
rs61871744 | 124,203,787 | T/C | 0.96/0.94 | 0.99/0.99 | |
rs59616332 | 124,208,562 | ATAAAC/- | 0.96/NA | 0.99/NA | |
rs11200630 | 124,209,684 | T/C | 0.99/0.98 | 1/0.99 | |
rs61871745 | 124,210,369 | G/A | 0.99/0.98 | 1/0.99 | |
rs11200632 | 124,211,536 | A/G | 0.99/0.99 | 1/1 | |
rs11200633 | 124,211,596 | C/T | 0.99/0.98 | 1/1 | |
rs61871746 | 124,212,913 | T/C | 1/1 | 1/1 | |
rs61871747 | 124,213,046 | C/T | 1/1 | 1/1 | |
rs370974631 | 124,213,143 | AA/- | 0.93/NA | 1/NA | |
rs200227426 | 124,213,671 | C/A | 0.96/NA | 0.99/NA | |
rs201396317 | 124,213,674 | C/A | 0.96/NA | 0.99/NA | |
rs199637836 | 124,213,677 | C/A | 0.96/NA | 0.99/NA | |
rs11200634 | 124,213,680 | C/A | 0.96/NA | 0.99/NA | |
rs75431719 | 124,213,688 | C/A | 0.96/NA | 0.99/NA | |
rs10490924 | 124,214,448 | G/T | Reference SNP | Reference SNP | 22, 23, 24, 25, 26, 27, 28, 36, and additional 140 refs |
rs144224550 | 124,214,600 | - /GT | 1/NA | 1/NA | |
rs36212731 | 124,214,976 | G/T | 0.99/1 | 1/1 | |
rs36212732 | 124,215,198 | A/G | 1/1 | 1/1 | |
rs36212733 | 124,215,211 | T/C | 1/1 | 1/1 | |
rs3750848 | 124,215,315 | T/G | 1/1 | 1/1 | 29 |
rs3750847 | 124,215,421 | C/T | 1/1 | 1/1 | 30 |
rs3750846 | 124,215,565 | T/C | 1/1 | 1/1 | 1, 29 |
rs566108895 | 124,216,823 | G/T | 0.91/NA | 0.99/NA | |
rs3793917 | 124,219,275 | C/G | 0.99/0.98 | 1/0.99 | 29, 31, 32, 33 |
rs3763764 | 124,220,061 | A/G | 0.98/0.98 | 0.99/0.99 | |
rs11200638 | 124,220,544 | G/A | 0.98/0.9 | 0.99/0.97 | 17, 18, 19, 20, 21, 22, 23, and additional 100 refs |
rs1049331 | 124,221,270 | C/T | 0.97/0.96 | 0.99/0.99 | 34, 37 |
rs2293870 | 124,221,276 | G/C,T | NA/0.9 | NA/0.95 | 34, 38, 39 |
rs2284665 | 124,226,630 | G/T | 0.96/0.94 | 0.99/0.98 | 35 |
rs60401382 | 124,227,624 | C/T | 0.84/0.82 | 0.98/0.97 | |
rs11200643 | 124,229,203 | C/T | 0.82/0.8 | 0.96/0.94 | |
rs58077526 | 124,230,024 | A/C | 0.91/0.89 | 0.96/0.95 | |
rs932275 | 124,231,464 | G/A | 0.93/0.89 | 0.97/0.96 | 29 |
rs2142308 | 124,234,037 | G/C | 0.92/0.89 | 0.97/0.96 |