Table 1 of Liao, Mol Vis 2017; 23:318-333.


Table 1. The 34 polymorphisms in linkage disequilibrium that form an AMD-associated haplotype block.

SNP Chr 10 position (GPCh37) REF/ALT Allele r2 LDlink/ HaploReg D' LDlink/ HaploReg AMD References
rs61871744 124,203,787 T/C 0.96/0.94 0.99/0.99  
rs59616332 124,208,562 ATAAAC/- 0.96/NA 0.99/NA  
rs11200630 124,209,684 T/C 0.99/0.98 1/0.99  
rs61871745 124,210,369 G/A 0.99/0.98 1/0.99  
rs11200632 124,211,536 A/G 0.99/0.99 1/1  
rs11200633 124,211,596 C/T 0.99/0.98 1/1  
rs61871746 124,212,913 T/C 1/1 1/1  
rs61871747 124,213,046 C/T 1/1 1/1  
rs370974631 124,213,143 AA/- 0.93/NA 1/NA  
rs200227426 124,213,671 C/A 0.96/NA 0.99/NA  
rs201396317 124,213,674 C/A 0.96/NA 0.99/NA  
rs199637836 124,213,677 C/A 0.96/NA 0.99/NA  
rs11200634 124,213,680 C/A 0.96/NA 0.99/NA  
rs75431719 124,213,688 C/A 0.96/NA 0.99/NA  
rs10490924 124,214,448 G/T Reference SNP Reference SNP 22, 23, 24, 25, 26, 27, 28, 36, and additional 140 refs
rs144224550 124,214,600 - /GT 1/NA 1/NA  
rs36212731 124,214,976 G/T 0.99/1 1/1  
rs36212732 124,215,198 A/G 1/1 1/1  
rs36212733 124,215,211 T/C 1/1 1/1  
rs3750848 124,215,315 T/G 1/1 1/1 29
rs3750847 124,215,421 C/T 1/1 1/1 30
rs3750846 124,215,565 T/C 1/1 1/1 1, 29
rs566108895 124,216,823 G/T 0.91/NA 0.99/NA  
rs3793917 124,219,275 C/G 0.99/0.98 1/0.99 29, 31, 32, 33
rs3763764 124,220,061 A/G 0.98/0.98 0.99/0.99  
rs11200638 124,220,544 G/A 0.98/0.9 0.99/0.97 17, 18, 19, 20, 21, 22, 23, and additional 100 refs
rs1049331 124,221,270 C/T 0.97/0.96 0.99/0.99 34, 37
rs2293870 124,221,276 G/C,T NA/0.9 NA/0.95 34, 38, 39
rs2284665 124,226,630 G/T 0.96/0.94 0.99/0.98 35
rs60401382 124,227,624 C/T 0.84/0.82 0.98/0.97  
rs11200643 124,229,203 C/T 0.82/0.8 0.96/0.94  
rs58077526 124,230,024 A/C 0.91/0.89 0.96/0.95  
rs932275 124,231,464 G/A 0.93/0.89 0.97/0.96 29
rs2142308 124,234,037 G/C 0.92/0.89 0.97/0.96