Table 1 of
Chintalapudi, Mol Vis 2016; 22:1318-1331. Table 1 of
Chintalapudi, Mol Vis 2016; 22:1318-1331.
Table 1. Summary of candidate genes.
| Gene I.D. | Location | Max LRS value and Location | Probe set I.D. and BLAT specificity | Markers flanking the gene | Mean expression level | SNPs and Indels |
|---|---|---|---|---|---|---|
| Hspa5 | Chr2: 34,772,090-34776529 bp | 18.3; Chr2:172.56 Mb | ILMN_1255561; 2.6 | rs13476425 | 7.614 | • Two transcript variants |
| Sulf2 | Chr2: 34,772,090-34776529 bp | 20.6; Chr15: 87.93 Mb | ILMN_1234624; 3.1 | rs13476894 | 7.525 | • Three transcript variants • One non-synonymous SNP in exon 14 • One each synonymous SNP in exon 4 and exon 12 • 156 SNPs • 46 insertions/ deletions |
| B4galt5 | Chr2: 167,298,445-167349178 bp | 14.9; ChrX: 143.40 Mb | ILMN_1220235; 2.2 | rs6219107 | 7.052 | • One SNP at a nonsplice site • Two insertion/deletion |
| Dpm1 | Chr2: 168,209,048-168230379 bp | 19.5; Chr5: 104.57 Mb | ILMN_2590054; 2.9 | rs3708726 | 9.397 | - |
| Fbln1 | Chr15: 85,115,885-85115935 bp | 26.0; Chr15: 82.94 Mb | ILMN_2602770; 2.2 | rs6357520 | 7.534 | • Three each synonymous SNP in exons 4,5 and 15 • 452 SNPs • 77 insertions/ deletions |
| Glt8d3 | Chr15: 93,239,742-93275084 bp | 26.8; Chr15: 94.14 Mb | ILMN_2895067; 2.6 | rs13482715 | 8.380 | • One synonymous SNP at exon 5 • 78 SNPs • 21 insertions/ deletions |
| Pmm1 | Chr15: 81,951,106-81960867 bp | 34.6; Chr15: 81.65 Mb | ILMN_2611027; 2.8 | rs6276391 | 12.317 | • Two synonymous SNPs each in exons 2 and 8 • 15 SNPs • Eight insertions/ deletions |