Table 4 of Sardell, Mol Vis 2016; 22:1062-1076.


Table 4. The 10 most strongly associated genes from SKAT gene-based tests, p values and number of SNVs included per gene.

Variants Gene p-value n variants
Rare stop/splice or damaging missense variants PRRC2C 1.08×10−3 4
  METTL9 1.93×10−3 3
  ZCWPW1 2.18×10−3 3
  FAM131C 3.52×10−3 2
  TMPRSS3 3.72×10−3 1
  DNHD1 4.09×10−3 3
  MFSD9 4.11×10−3 2
  MYOM2 4.58×10−3 3
  CCDC27 4.91×10−3 2
  SLC12A1 4.98×10−3 1
Rare variants LOC402160 2.53×10−4 8
  HMGA2 2.88×10−4 8
  HMCES 3.66×10−4 3
  METTL9 4.85×10−4 6
  CRABP1 5.75×10−4 4
  SLIT3 5.91×10−4 31
  NOL4 7.05×10−4 9
  BSDC1 7.15×10−4 9
  SLC46A3 7.62×10−4 5
  SH3GL3 8.63×10−4 4
All variants ASRGL1 7.52×10−5 15
  BSDC1 9.54×10−5 14
  ATP6V0E2 1.26×10−4 18
  SKIV2L* 1.68×10−4 28
  SLIT3 1.82×10−4 80
  KPNB1 2.52×10−4 9
  NOTCH2 2.69×10−4 37
  ZNF460 3.37×10−4 5
  HMCES 3.50×10−4 5
  NMNAT3 4.04×10−4 10
*prior AMD locus