Table 5 of
Mansergh, Mol Vis 2015; 21:61-87. Table 5 of
Mansergh, Mol Vis 2015; 21:61-87.
Table 5. Expression “neighbours” of well-known retinal and eye specification genes, as determined by t-SNE.
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|---|---|---|---|---|---|
| 1110051M20Rik | Crx [32,33,35,38,40] | Gnat1 [31,36-38,40] | Mpp7 | Pstk | Smarcd2 [31] |
| A530058N18Rik | Crxos1 [39] | Gnb1 [36,38,40] | Mrpl49 [31] | Ptp4a3 [16,31,32] | Smpd2 |
| Abcg4 [32] | D0Kist5 | Gnb3 [31,36] | Mtfp1 | Ptpn21 [31,32] | Snap25 [16,31,36,38] |
| Acsl1 | D2Ertd63e | Gngt1 [16,31,34-36] | Mthfr | Rab27a | Snta1 [16,31] |
| Adcy7 | Dalrd3 | Grk1 [32,34,38] | Ndrg1 [37] | Rab28 [16,31] | Spint2 |
| Agtpbp1 [31,32] | Darc | Gucy2e [42] | Ndufv1 | Rbks | St3gal3 [32] |
| Aipl1 [31,32,35-38] | Dgke | Guk1 | Neurog2 [30] | Rbp3 [31,35,36,38-41] | St6galnac2 |
| Amy1 | Dleu2 | Gulo [36,40] | Nme5 | Rcvrn [16,30,31,36,37] | Stk39 [31] |
| Ankrd33 [31,37] | Dnaja4 | Hcn1 [38] | Nr2e3 [31,34-36,38,40] | Rd3 40 | Stmn1 |
| Ap1b1 [31] | Doc2b [31] | Heph | Nr6a1 | Rdh12 [32,34,35,38,40] | Stx3 [31,42] |
| Ap2m1 [31] | Dusp26 | Hmx1 | Nrl [31,34-36,38,40] | Rho [16,30-32,34-38,40,42] | Stxbp1 [31] |
| Arl6 [38], | Ebf3 | Icmt [31] | Nsf | Rhpn1 | Suv39h2 |
| B9d1 | Efnb2 [31] | Ift81 | Nxnl2 [35] | Rian | Syngr1 |
| Bbs9 [16,35,38], | Elavl3 | Igsf9 | Otud7b | Rnf157 | Sys1 |
| BC027072 [35], | Elovl2 | Impdh1 [38] | Otx2 [33,38] | Rom1 [30,31,35,36,38,40] | Syt1 [16,32] |
| Btc [16,31,42] | Elovl4 [31,38] | Impg1 [35] | Pax6 [30,31] | Rp1 | Tbc1d8 [34] |
| C1ql3 | Eml3 [31] | Itfg2 [31] | Pdc [30,34,36,38] | Rpgr [32] | Tbx2 |
| Calml4 | Eml5 | Kcnb1 [31,37] | Pde6a [30,32,35,36,38,40] | Rpgrip1 [31,34,35,38-40] | Tmeff1 |
| Camk2d [31] | Endod1 | Kcnk1 | Pde6b [16,30-32,35-38,40] | Rraga | Tmem229b |
| Camsap1 [31,32] | Eno2 [16,31] | Kif5c | Pde6g [16,30-32,34-36,38,40] | Rs1 [31,34,35,37,38,40] | Tob2 |
| Cdhr1 [34] | Eno3 | Kif9 | Pex11a | Rsph9 | Tox |
| Cdk5r2 | Epb4.1l3 [31] | Klc1 | Pex5l | Rtbdn | Ttc8 [16,38,40] |
| Cep250 | Ezh1 | Klc3 [31] | Pitpnm1 [31] | Rxrg [36] | Tub [31] |
| Cep290 [32,38] | Fabp4 | Krt18 | Pja1 | Sag [31,34,36,38,40] | Tuba4a |
| Chchd10 | Fam132a | Llgl2 [34] | Pmepa1 | Samd11 [31,35] | Tulp1 [31,33,35,38,40] |
| Chga [31] | Fam161a | Lpgat1 [31,37] | Podxl [16,31,34,42] | Sec14l2 [34] | Uckl1 |
| Chrna5 [16,42] | Fam89a | Lrp2 | Ppef2 | Sema7a [16] | Unc119 [31,36,38,40] |
| Ckmt1 | Fance | Lrrc48 | Ppm1b [31] | Sez6 [16,42] | Unc13b |
| Clstn1 [16,31,42] | Fbrs | Lztfl1 | Ppp3cc | Shisa2 [42] | Vldlr [31] |
| Cmtm7 | Flcn | Magi2 16 | Prdm9 | Slc12a5 | Vopp1 |
| Cnga1 [16,34,36-38,40,42] | Foxo1 [31] | Mak [31,34,35] | Prickle1 [31] | Slc19a1 | Vsx2 |
| Cplx3 | Frmd4b [31] | Mdm1 | Prkab1 [31] | Slc25a33 | Vtn [31,32] |
| Cplx4 [16,34], | Fyco1 | Meg3 | Prom1 [16,31,34,38,40,42] | Slc27a2 | Zfp532 |
| Crmp1 | Gdpd3 | Mpp4 [35] | Prr14 | Slc7a8 [16] | Zranb1 |