Table 3 of Mansergh, Mol Vis 2015; 21:61-87.

Table 3. Genes downregulated in rods, as determined by downregulation in FACSed Rho-eGFP positive cells and expression changes in at least 2/3 other comparisons (RPC versus pn1, RPC versus pn5, pn1 versus pn5).

Downregulated genes.      
1110002B05Rik Dbn1 Itgb1 Pip4k2a Spred1
1190002N15Rik Dkk3 [31] Itm2c Pkia [31] Srgap3
2700094K13Rik Dpysl4 Kcnmb4 Plagl1 [37] Sri [32]
41160 Dpysl5 Kctd17 Ppap2b St14
6330527O06Rik [31] Ebf1 Kdr Ppic St6galnac5
Abcd2 [39] Epdr1 Khdrbs3 Ppp1r14b [31] St8sia2
Adam12 Epha3 Klhl13 Pros1 Stmn2
Agap1 Evl Laptm4a Ptgds Stmn4
Aif1l F2r Ldb1 [32] Ptn Sulf2
Aldh2 Fads1 Lgr5 Ptprk Tcf7l1
Ank3 [32] Fam19a5 Limk1 Ptprz1 Tcf7l2
Ankrd43 Fbxw7 Litaf [31] Qk Tcfap2a
Anxa5 Fezf2 Lrp1 Rab31 Tcfap2b
Arhgdia Fgf13 Lrrn1 Rai14 Tcfap2c
Arrb1 Fgf15 Magt1 Rap2b Tiam1
Ass1 Fgf9 Map4k4 [31] Rftn2 Timp2 [31]
Astn1 Fgfr1 Mapk6 [31] Rgl1 Tmeff2
Atp2b2 Fgfrl1 LOC100046239 Marveld1 Rgs2 Tmem43
Auts2 [32] Fjx1 Mdk Rnasel [31] Tmtc4
B2m Fkbp7 Mfge8 Rnd3 Tnfrsf21
Basp1 LOC100045716 Fkbp9 Mllt11 Rrh Tor1aip2
Bcl11a Foxn4 Mmp2 Rrm2 Tpbg
Bhlhe22 Ftl1/2/Gm10116 Mpp3 Rsu1 Traf4
Cadps [31] Fuca1 Msn Rtn4 [31] Tspan14
Capn2 Fyn Mt1 Sash1 Vim
Cartpt Gad2 Mtap6 Sat1 [31] Ywhag [37]
Cat Gm3932 Myadm Scd2 [37] Zbtb12
Cbx2 Gng3 Myb [30,37] Sema4d  
Ccng2 [31] Gp1bb Ncan Sepp1 Downregulated
Cd151 [39] Gpc1 [31] Ndrg4 Serpine2 + Neighbours
Cd9 Gpc3 Neurod4 [30,33,37] Serping1 Cmtm7
Cdc42se1 Gpr37 [31] Nfia Serpinh1 Darc
Cfl1 [30] Gpr56 Nfib [35] Serpini1 Ebf3
Chn2 Gprc5c Nfix [31,35] Sfxn1 Efnb2 [37]
Chodl Grb10 Ngfr Sgk3 Elavl3
Cnot2 [35] Grn Nhsl1 Sh3bp4 Hmx1
Cntnap2 [32] Gstm1 Nme2 Six3 Kcnk1
Col18a1 H19 [35] Notch2 Skap2 Kif5c [32]
Col2a1 [38,40] H2afy2 Npc2 Slc1a3 Klc1, LOC100047609
Crabp1 Hbb-b1/Hbb-b2 Olfm1 [32] Slc1a4 Meg3
Crmp1 Hkdc1 Olig2 Slc32a1 Pmepa1
Crym [41] Hmgb2 [37] Pak1 Smad2 Rian
Csnk1e Ier5 Pax6 [30,31] Smarce1 Stmn1
Csrp1 [37] Igfbp2 Pbxip1 Socs2 Tbx2
Ctsc Il17ra Pcp4 Sox5 Vsx2
Cyp26a1 Ina Pcyox1 Sox6 Zfp532
Dag1 Isl1 [31,37] Pdlim5 Sparc [31]  
Dbi Itgav Phlpp1 Spc25  

Genes in bold and italic are listed in RetNet, those identified in other studies are indicated by the relevant reference number in red. Overlaps with the Neighbors data set are listed separately

Mansergh, Mol Vis 2015; 21:61-87. http://www.molvis.org/molvis/v21/61

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