Table 5 of Singh, Mol Vis 2014; 20:704-713.

Table 5. Haplotype analysis for the studied SNP markers.

L1 L2 D LOD R2 CI low CI high Dist T-int
rs4986790 rs4986791 0.051 0 0 0.01 0.82 300 0
rs10759931 rs1927914 0.236 2.67 0.051 0.12 0.33 578 3.4
rs10759931 rs1927911 0.155 0.73 0.013 0.02 0.29 5907 -
rs1927914 rs1927911 0.371 4.75 0.069 0.24 0.49 5329 5.48

The table describes the LD value calculated for the all present SNPs of TLR4 gene. L1 and L2 are loci in question, D' is the value of D prime between the two loci, LOD is the log of the likelihood odds ratio, r2 is the correlation coefficient between the two loci, CI low is 95% confidence lower bound on D', CI high is the 95% confidence upper bound on D', Dist is the distance (in bases) between the loci, and is only displayed if a marker info file has been loaded, T-int is a statistic used by the HapMap Project to measure the completeness of information represented by a set of markers in a region.

Singh, Mol Vis 2014; 20:704-713. http://www.molvis.org/molvis/v20/704

©2014 Molecular Vision http://www.molvis.org/molvis/

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