Molecular Vision: Zhang, Mol Vis 2014; 20:56-72. Table 1

Table 1. The eye tissue samples used in the microarray analysis.

Parameters measured in each replicate (3 replicates per group)	WT retina (WR52)	WT retina+RPE (WRR52)	smarca4 retina (YR52)	smarca4 retina+RPE (YRR52)
Number of tissue per replicate	10, 10, 10	10, 10, 10	10, 9, 10	6, 6, 6
RNA yield from extraction (3 replicates)/ ng	170.1, 179.93, 153.22	218.69, 179.83, 266.87	138.6, 164.3, 204.37	112.18, 118.4, 142.1
Input RNA amount for Affymetrix/ ng	33, 33, 33	33, 33, 33	33, 33, 33	24, 24, 24

Four types of eye tissue samples were used in this study, including WT retina (WR52), WT retina+RPE (WRR52), smarca4 retina (YR52) and smarca4 retina+RPE (YRR52). Three independent biologic replicates were collected and the number of samples in each replicate is listed. The yield of the total RNAs extracted from these samples and the input RNA amount used for each Affymetrix GeneChip experiment are listed in the Table as well. These parameters were also used in the estimation of RNA expression values as described in Methods.