Table 2 of Sodi, Mol Vis 2014; 20:1717-1731.


Table 2. Pathogenicity clues of the missense variant found in MYO7A gene in this study.

DNA Level (cDNA)
Protein Level (p.) Conserved nucleotide (phyloP: −14.1;6.4) Physico
chemical difference Grantham
[0–215] Variation is in protein domain Align GVGD SIFT Mutation
Taster
c.4798G>C(p.Gly1600Arg) Highly
(phyloP: 5.86) Moderate
(Grantham
dist.: 125) FERM domain C65
(GV:0.00
- GD: 125.13) Deleterious
(score: 0,
median: 3.70) disease causing
(p value: 1)
c.5810T>C(p.Leu1937Pro) Highly
(phyloP: 4.73) Moderate
(Grantham
dist.: 98) FERM domain
(Band 4.1 domain) C0
(GV:353.86
- GD: 0.00) Deleterious
(score: 0,
median: 3.69) disease causing
(p value: 1)
c.4039C>A (p.Arg1347Ser) Weakly
(phyloP: 1.50) Moderate
(Grantham
dist.: 110) FERM,
N-terminal C0
(GV:241.31
- GD: 21.04) Deleterious
(score: 0,
median: 3.70) disease causing
(p value: 1)
c.977T>C (p.Leu326Pro) Highly
(phyloP: 5.13) Moderate
(Grantham
dist.: 98) Myosin head,
motor domain GVGD: C0
(GV:234.72
- GD: 50.17) Deleterious
(score: 0,
median: 3.71) disease causing
(p value: 1)