Table 1 of
Hoang, Mol Vis 2014; 20:1491-1517.
Table 1. Summary of base calling and alignments.
Sequence reads | E1 | E2 | E3 | F1 | F2 | F3 |
---|---|---|---|---|---|---|
Total raw reads | 33,174,286 | 29,919,226 | 29,965,660 | 28,652,759 | 30,661,663 | 24,833,352 |
Reads passed quality filtering | 30,524,674 (92%) | 27,392,629 (91.5%) | 28,203,944 (94.1%) | 27,019,907 (94.3%) | 27,760,247 (90.5%) | 22,735,990 (91.6%) |
Mapped reads | 29,414,088 (89%) | 27,286,119 (91%) | 27,299,912 (91.1%) | 25,814,802 (90%) | 27,495,080 (89.6%) | 22,630,822 (91.1%) |
Uniquely and perfectly mapped reads | 12,925,906 (39%)* | 18,954,231 (63.3%) | 18,408,241 (61.4%) | 18,686,534 (65.2%) | 18,354,154 (59.8%) | 15,975,465 (64.3%) |