Table 3 of Ritchie, Mol Vis 2014; 20:1281-1295.


Table 3. PC adjusted age-at-diagnosis association analysis results.

CHR SNP Reference Allele Case MAF Beta P value Gene Left Gene Right Gene Type of Variant
12 rs12296937 G 0.0267 −1.08 6.39E-07 ACSS3 LIN7A PPFIA2 intron
12 rs2574730 A 0.0371 −1.003 3.04E-06 ACSS3 LIN7A PPFIA2 intron
12 rs769056 T 0.0369 0.6454 3.39E-06 ACSS3 LIN7A PPFIA2 intron
12 rs11835432 T 0.1937 0.6667 7.64E-06 NA LOC100132564 LOC644489 NA
1 rs207145 T 0.1237 −0.6722 7.9E-06 NA LOC645506 GOT2L1 NA
12 rs2593270 A 0.2593 −1.263 1.06E-05 NA LOC100132564 LOC644489 NA
12 rs2656824 G 0.2529 0.7466 1.19E-05 NA LOC100132564 LOC644489 NA
15 rs4965818 G 0.3444 −0.8272 1.37E-05 SNRPA1 SELS PCSK6 intron
12 rs337656 T 0.2225 −0.7027 1.45E-05 NA LOC643264 CLLU1OS NA
12 rs10778791 G 0.0354 −0.7015 2.08E-05 ACSS3 LIN7A PPFIA2 intron
2 rs12612521 C 0.2144 −0.6601 0.000024 NA LOC728241 LOC100131284 NA
2 rs10932058 C 0.4981 −0.7464 2.68E-05 NA LOC100132132 LOC100132669 NA
15 rs748696 G 0.4491 −0.6481 2.98E-05 KIAA1199 FAM108C1 LOC100128570 intron
15 rs1524876 T 0.4568 0.7457 3.57E-05 MTMR10 MTMR15 TRPM1 intron
15 rs4778856 G 0.4667 0.7429 3.77E-05 KIAA1199 FAM108C1 LOC100128570 intron
9 rs2229594 T 0.1722 0.7258 3.95E-05 BAAT LOC347275 LOC100128665 utr-3
16 rs933717 T 0.435 0.6402 0.000041 FBXO31 LOC730018 MAP1LC3B intron
1 rs6663771 G 0.4138 0.652 4.24E-05 NA SPATA17 RRP15 NA
15 rs1432442 G 0.0913 0.6621 0.000043 MAP2K1 ATP5J2P6 SNAPC5 intron
5 rs2468475 T 0.473 −0.6838 4.59E-05 NA LOC100128659 LOC729862 NA
4 rs2406040 G 0.266 0.8714 4.59E-05 NA LOC646316 LOC729578 NA
4 rs2406041 C 0.2591 −1.213 0.000051 NA LOC646316 LOC729578 NA
2 rs13414831 G 0.2974 −2.441 5.34E-05 NA UBR3 MYO3B NA
20 rs864184 A 0.2301 −1.864 0.000054 PHACTR3 LOC645605 SYPC2 intron
4 rs10517073 T 0.4173 −2.027 5.98E-05 ANAPC4 ZCCHC4 LOC645433 intron
18 rs578026 C 0.3204 −2.022 0.000061 CLUL1 CETN1 C18orf56 intron
2 rs16857804 G 0.2944 −0.8456 6.24E-05 NA UBR3 MYO3B NA
2 rs4560089 G 0.3525 1.146 6.35E-05 NA LOC100130842 MRPL50P1 NA
12 rs934078 A 0.1049 −1.048 6.57E-05 NA OSTF1P TBX3 NA
1 rs1416156 A 0.4182 0.8037 6.96E-05 NA SPATA17 RRP15 NA
2 rs617222 A 0.2478 0.8032 7.03E-05 NA LOC100129746 EPHA4 NA
4 rs2897305 G 0.2646 0.8959 7.06E-05 NA LOC646316 LOC729578 NA
20 rs6070943 A 0.1765 −0.6294 7.23E-05 PHACTR3 LOC645605 SYCP2 intron
1 rs991007 T 0.1118 0.656 7.26E-05 INADL TM2D1 L1TD1 intron
12 rs12099972 A 0.0821 1.132 7.71E-05 NA LOC100129881 LOC441644 NA
2 rs9309489 A 0.2321 −0.6522 7.86E-05 NA TACR1 FAM176A NA
14 rs1742707 A 0.4406 0.6657 7.97E-05 NA CPSF2 SLC24A4 NA
17 rs9908117 C 0.2586 −0.7235 8.27E-05 NA LOC100128284 WSCD1 NA
9 rs7874443 C 0.3182 −0.6617 8.34E-05 NA GOLM1 LOC100130433 NA
2 rs10195113 T 0.0657 −0.7182 8.41E-05 NA SLC8A1 LOC729984 NA
5 rs1472606 G 0.3331 −0.69 0.000085 NA SFXN1 HRH2 NA
18 rs7227421 G 0.0358 −1.679 9.02E-05 GNAL LOC729602 CHMP1B intron
10 rs4388822 T 0.0717 −0.7606 9.14E-05 NA LOC439992 GRID1 NA
5 rs2277939 A 0.3473 −0.8382 9.34E-05 SAP30L GALNT10 HAND1 intron