Table 3 of Paylakhi, Mol Vis 2012; 18:241-254.


Table 3. Gene ontology terms enriched by analysis of non-housekeeping human TM expressed genes (Bonferroni p≤0.01).

Category Term Gene annotation No. genes Bonferroni p-value
Biologic process GO:0048731 System development 227 1.88E-18
Biologic process GO:0032502 Developmental process 280 2.45E-18
Biologic process GO:0048856 Anatomic structure development 239 4.89E-18
Biologic process GO:0007275 Multicellular organismal development 259 2.44E-17
Biologic process GO:0048513 Organ development 177 4.28E-15
Biologic process GO:0009653 Anatomic structure morphogenesis 134 1.13E-13
Biologic process GO:0042127 Regulation of cell proliferation 95 1.88E-10
Biologic process GO:0032501 Multicellular organismal process 320 7.73E-10
Biologic process GO:0030198 Extracellular matrix organization 28 1.08E-08
Biologic process GO:0051270 Regulation of cell motion 38 2.41E-08
Biologic process GO:0007399 Nervous system development 109 3.33E-07
Biologic process GO:0042060 Wound healing 36 3.35E-07
Biologic process GO:0040012 Regulation of locomotion 36 3.89E-07
Biologic process GO:0042221 Response to chemical stimulus 122 5.17E-07
Biologic process GO:0022603 Regulation of anatomic structure morphogenesis 38 1.10E-06
Biologic process GO:0043062 Extracellular structure organization 32 1.52E-06
Biologic process GO:0006928 Cell motion 60 2.88E-06
Biologic process GO:0030334 Regulation of cell migration 32 3.86E-06
Biologic process GO:0001944 Vasculature development 40 4.58E-06
Biologic process GO:0032879 Regulation of localization 70 5.99E-06
Biologic process GO:0009888 Tissue development 74 7.37E-06
Biologic process GO:0001568 Blood vessel development 39 7.86E-06
Biologic process GO:0050793 Regulation of developmental process 74 1.33E-05
Biologic process GO:0030154 Cell differentiation 141 1.38E-05
Biologic process GO:0048522 Positive regulation of cellular process 154 2.02E-05
Biologic process GO:0009887 Organ morphogenesis 65 2.12E-05
Biologic process GO:0040017 Positive regulation of locomotion 23 2.16E-05
Biologic process GO:0051272 Positive regulation of cell motion 23 2.16E-05
Biologic process GO:0051239 Regulation of multicellular organismal process 92 3.57E-05
Biologic process GO:0008284 Positive regulation of cell proliferation 52 5.50E-05
Biologic process GO:0048869 Cellular developmental process 143 6.15E-05
Biologic process GO:0009611 Response to wounding 61 7.10E-05
Biologic process GO:0006950 Response to stress 141 8.91E-05
Biologic process GO:0022008 Neurogenesis 66 1.06E-04
Biologic process GO:0048518 Positive regulation of biologic process 162 1.65E-04
Biologic process GO:0009605 Response to external stimulus 88 1.99E-04
Biologic process GO:0048514 Blood vessel morphogenesis 33 2.49E-04
Biologic process GO:0007167 Enzyme linked receptor protein signaling pathway 44 4.24E-04
Biologic process GO:0001501 Skeletal system development 42 4.53E-04
Biologic process GO:0048699 Generation of neurons 61 4.77E-04
Biologic process GO:0048519 Negative regulation of biologic process 146 4.87E-04
Biologic process GO:0030335 Positive regulation of cell migration 20 5.44E-04
Biologic process GO:0048523 Negative regulation of cellular process 136 5.95E-04
Biologic process GO:0007155 Cell adhesion 71 6.80E-04
Biologic process GO:0022610 Biologic adhesion 71 7.21E-04
Biologic process GO:0007169 Transmembrane receptor protein tyrosine kinase signaling pathway 33 0.001
Biologic process GO:0065008 Regulation of biologic quality 122 0.0015
Biologic process GO:0016477 Cell migration 37 0.0018
Biologic process GO:0008285 Negative regulation of cell proliferation 44 0.0019
Biologic process GO:0032101 Regulation of response to external stimulus 26 0.0033
Biologic process GO:0043067 Regulation of programmed cell death 76 0.0053
Biologic process GO:0035295 Tube development 31 0.0063
Biologic process GO:0010941 Regulation of cell death 76 0.0064
Biologic process GO:0042981 Regulation of apoptosis 75 0.0074
Biologic process GO:0051674 Localization of cell 38 0.0088
Biologic process GO:0048870 Cell motility 38 0.0088
Cellular component GO:0044421 Extracellular region part 109 7.78E-13
Cellular component GO:0005576 Extracellular region 172 7.52E-10
Cellular component GO:0031012 Extracellular matrix 51 7.34E-09
Cellular component GO:0044459 Plasma membrane part 179 1.96E-08
Cellular component GO:0031226 Intrinsic to plasma membrane 114 5.43E-08
Cellular component GO:0005578 Proteinaceous extracellular matrix 47 6.44E-08
Cellular component GO:0005887 Integral to plasma membrane 110 2.62E-07
Cellular component GO:0005615 Extracellular space 70 1.51E-05
Cellular component GO:0005886 Plasma membrane 257 2.57E-05
Cellular component GO:0005581 Collagen 13 3.45E-05
Cellular component GO:0044420 Extracellular matrix part 23 3.87E-05
Cellular component GO:0005624 Membrane fraction 73 9.01E-04
Cellular component GO:0000267 Cell fraction 89 0.0027
Cellular component GO:0005626 Insoluble fraction 73 0.0032
Molecular function GO:0005515 Protein binding 509 4.31E-06
Molecular function GO:0005102 Receptor binding 86 4.26E-05
Molecular function GO:0005201 Extracellular matrix structural constituent 19 4.31E-04
Molecular function GO:0008201 Heparin binding 20 0.0015
Molecular function GO:0008083 Growth factor activity 25 0.0038
Molecular function GO:0005539 Glycosaminoglycan binding 23 0.004
Molecular function GO:0030247 Polysaccharide binding 24 0.0059
Molecular function GO:0001871 Pattern binding 24 0.0059
Molecular function GO:0004714 Transmembrane receptor protein tyrosine kinase activity 15 0.0084