Table 5 of Fink, Mol Vis 2012; 18:2229-2240.

Table 5. Single marker association in the validation sample of 340 German Brown cows.

SNP ID Chromosome - position (bp) χ2 allele p allele χ2 genotype p genotype χ2 trend p trend
Hapmap42731-BTA-92931 5–21768260 2.34 0.126 4.64 0.098 2.26 0.132
ARS-BFGL-NGS-12640 5–23861315 6.73 0.010 8.07 0.017 6.36 0.011
DN825458:c.168G>T* 5–24073205 17.18 <0.001 20.64 <0.001 19.24 <0.001
XM_596354:c.1678A>G* 5–24142953 0.54 0.460 0.59 0.742 0.54 0.461
EH152007:c.462T>C* 5–24215836 <0.001 0.996 0.60 0.739 <0.001 0.996
Hapmap41951-BTA-73168 5–28442563 0.17 0.681 0.62 0.732 0.18 0.673
BTA-73209-no-rs 5–29496625 1.35 0.243 2.60 0.272 1.45 0.228
ARS-BFGL-NGS-49972 5–30012017 3.20 0.07 3.81 0.149 3.46 0.063
AM931450:c.205T>G* 5–42079372 2.48 0.115 2.90 0.235 2.88 0.090
ARS-BFGL-NGS-93837 18–55807264 0.91 0.338 1.85 0.396 0.98 0.321
AM930539:g.569A>G+ 18–56565243 2.17 0.141 2.26 0.323 2.07 0.150
Hapmap42211-BTA-43910 18–58203733 2.38 0.123 2.58 0.108 2.58 0.108
ARS-BFGL-BAC-31654 18–62250437 1.38 0.238 1.74 0.419 1.36 0.242
ARS-BFGL-NGS-1786 18–62571431 0.14 0.702 0.67 0.715 0.16 0.692
AM930544:g.71G>A+ 18–62704882 1.87 0.172 3.86 0.146 1.94 0.163
AM930553:c.703C>A+ 18–62800146 9.24 0.005 9.22 0.002 8.95 0.003
AM930547:g.194C>T+ 18–62800898 8.06 0.006 8.42 0.015 8.15 0.004
AM930543:g.103T>G+ 18–62878596 6.18 0.013 7.15 0.028 5.88 0.015
ARS-BFGL-NGS-41595 18–63400996 0.01 0.900 0.04 0.979 0.01 0.903

The results of association analysis for 19 SNPs on BTA5 and BTA18 with bilateral convergent strabismus with exophthalmus in German brown cattle, their χ2-test statistics of the case-control analysis and p-values (p) are presented. Five SNPs detected by cDNA analyses are marked by an asterisk and five SNPs that composed the associated haplotype on BTA18 in a previous study [8] are marked with a plus sign.

Fink, Mol Vis 2012; 18:2229-2240. http://www.molvis.org/molvis/v18/a236

©2012 Molecular Vision http://www.molvis.org/molvis/

ISSN 1090-0535