Molecular Vision: Fink, Mol Vis 2012; 18:2229-2240. Table 4

Table 4. Single marker analysis.

			Number of		MAF (%)
SNP ID	Chromosome- position (bp)	Location (gene name) UMD 3.1	Controls	Cases	Controls	Cases	HET (%)	PIC (%)	p (HWE)
Hapmap42731-BTA-92931	5–21768260	intergenic	161	179	39.94	34.32	45.12	35.81	0.535
ARS-BFGL-NGS-12640	5–23861315	intergenic	159	178	19.28	11.01	23.08	22.17	0.100
DN825458:c.168G>T*	5–24073205	PLXNC1	160	177	31.37	43.49	51.39	35.96	0.093
XM_596354:c.1678A>G*	5–24142953	PLXNC1	160	177	26.97	24.40	37.96	30.94	0.889
EH152007:c.462T>C*	5–24215836	PLXNC1	159	177	22.73	22.92	36.53	29.08	0.538
Hapmap41951-BTA-73168	5–28442563	Intergenic	160	179	43.79	42.31	51.38	37.02	0.391
BTA-73209-no-rs	5–29496625	DIP2B	161	179	36.04	31.66	47.56	34.75	0.260
ARS-BFGL-NGS-49972	5–30012017	intergenic	160	179	12.01	7.40	18.65	15.89	0.196
AM931450:c.205T>G*	5–42079372	KIF21A	111	137	55.41	42.86	57.0	37.5	0.211
ARS-BFGL-NGS-93837	18–55807264	MAMSTR	160	179	14.38	16.86	28.44	23.02	0.194
AM930539:g.569A>G	18–56565243	CPT1C	160	179	25.00	30.95	38.57	32.24	0.386
Hapmap42211-BTA-43910	18–58203733	intergenic	160	179	9.80	15.32	14.72	12.71	0.151
ARS-BFGL-BAC-31654	18–62250437	intergenic	159	179	39.22	34.32	45.57	35.62	0.751
ARS-BFGL-NGS-1786	18–62571431	intergenic	160	176	31.17	32.93	46.60	34.15	0.231
AM930544:g.71G>A	18–62704882	SYT5	160	179	8.75	6.51	14.45	12.92	0.448
AM930553:c.703C>A	18–62800146	RDH13	160	179	19.02	9.88	23.90	21.64	0.544
AM930547:g.194C>T	18–62800898	RDH13	160	179	17.50	9.52	23.71	20.71	0.839
AM930543:g.103T>G	18–62878596	NLRP7	160	179	31.74	39.08	43.40	35.29	0.319
ARS-BFGL-NGS-41595	18–63400996	MBOAT7	159	178	34.74	35.50	41.72	35.24	0.118

Shown are the single nucleotide polymorphisms (SNPs, n=19) which were genotyped for the sample of 340 German Brown cows, their location according to UMD 3.1, their number of genotyped cases and controls, minor allele frequencies (MAF) of genotyped cases and controls, polymorphism information content (PIC), heterozygosity (HET) and test results for Hardy–Weinberg equilibrium (HWE). SNPs detected by cDNA sequencing are marked by an asterisk.