Table 2 of Fink, Mol Vis 2012; 18:2229-2240.

Table 2. Haplotype association (BTA5).

Haplotype     Frequency (%)    
1 2 3 4 5 Frequency total (%) Standard error Controls Cases χ2 p
A G G A G 26.70 0.044 16.46 34.52 4.28 0.039
A G A A G 16.29 0.036 17.27 18.95 0.33 0.564
A G A C G 10.83 0.031 10.50 8.43 0.35 0.553
G G A A G 8.13 0.027 7.20 9.05 0.12 0.730
G G G C G 7.99 0.027 6.92 9.04 0.16 0.691
G A A C G 6.64 0.025 17.21 0 12.43 <0.001
G G A C G 4.92 0.021 5.25 3.22 0.37 0.544
G A G A G 3.23 0.017 0 5.17 2.23 0.135
G G G A C 2.88 0.016 4.60 1.56 0.84 0.358
A A A A C 2.78 0.016 0 3.45 1.41 0.235
A G G C C 2.18 0.014 6.68 0 5.65 0.018
A A A C G 1.92 0.014 5.61 0 4.44 0.035
A G G A C 1.65 0.013 0 1.89 0.79 0.374
G G G A G 1.49 0.012 0 2.99 1.58 0.209
G A A A G 1.23 0.011 0 1.72 0.69 0.407

Frequencies of the haplotypes with at least 1% in the sample of 52 German Brown cattle and their standard errors, haplotype frequencies of cases and controls and their associations with BCSE on bovine chromosome 5 are shown. In the haplotype column, 1=Hapmap42731-BTA-92931; 2=ARS-BFGL-NGS-12640; 3=Hapmap41951-BTA-73168; 4=BTA-73209-no-rs; 5=ARS-BFGL-NGS-49972.

Fink, Mol Vis 2012; 18:2229-2240. http://www.molvis.org/molvis/v18/a236

©2012 Molecular Vision http://www.molvis.org/molvis/

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