Table 1 of
Piñeiro-Gallego, Mol Vis 2012; 18:1794-1802.
Table 1. Oligonucleotides for genomic amplification and sequencing of exon 8, 10, and 16 of ALMS1 and exon 6 of RPGRIP1L.
Gene | Exon | Forward Primer (5′-3′) | Reverse Primer (5′-3′) | Product size (bp) | Tm (°C) |
---|---|---|---|---|---|
ALMS1 | 8.1 | GCTTTTTAAAGGCTCAAAGCTG | GTATTCCCGTCTTCTGCTCCACT | 646 | 52 |
8.2 | CAACTGGCATGTCAACTC | CTTCGGGTAGATGGCTGTC | 666 | 56 | |
8.3 | GTACCCACAGGACTTAGCA | ACTCCTGTTGATAGAAAATACTGG | 731 | 58 | |
8.4 | CTGACCAGAAGACTGTCCCAACAC | CAAGGCCTGCTGGTGGAAAAT | 515 | 64 | |
8.5 | CACACCAGCAGTACCGTCTAC | TCAGAGCCTCTTCAGTTGGATGATTA | 527 | 66 | |
8.6 | GAAAGTTTCACCTGTTCTTG | TGGTCCAGGAGCAGAAGAA | 1021 | 59 | |
8.7 | TGGCGCACCAACTATAACCTCTC | GCTGGTAGAAAATGACAGGCTTCC | 491 | 64 | |
8.8 | CTAAATAAAGAGGTTGTGAAAG | ATGTGAATAGAAAGAGGAAGTTA | 375 | 53 | |
8.9 | CAGGCCCTGCCAGACAGTGAG | CTGGCAACTCCTGCTGATGAAA | 565 | 63 | |
8.1 | GGTTCCTGGGCCTGCTGAC | TTGGGCTTTACTGTTTGAGAATAG | 534 | 61 | |
8.11 | TCACAAATAGAGAAGCCCAAGAT | ATGTGAAAAGGAACTAGGAAGAGC | 375 | 54 | |
8.12 | ATGTAACTGAAGATGTGCTGAAG | TTCTGCCTCCATCAAAAGTGTC | 473 | 61 | |
8.13 | AAGGATTTGCCAGATAGACAT | TCCTCTGTGAATGGCTGTCTGT | 515 | 53 | |
8.14 | ACTCTTAAGGAAATTCGGACAC | TTACAGATTTGGCTGCTTGATA | 391 | 54 | |
8.15 | CCTCTTCCACGGGTGTATCTAA | TGGCTAAGCTTCCTCAAAACA | 710 | 56 | |
10.1 | TGGTCTAATCTTAGCGTGGGT | ATGCATAGTAATTCACAAG | 774 | 55 | |
10.2 | ACACCATTTTCCCCTTCCT | CCGTGTGATTTCTCTGAGTGG | 706 | 59 | |
10.3 | TGTACTGGAGCATCTGTGGG | CAGTCAGCCCCAAATCACTG | 860 | 63 | |
16.1 | GCGAGGCTACTAAGCAACAAGGC | ACAGCCTGAGTTGGGTGAC | 650 | 60 | |
16.2 | CAGAAGGTCACCCCAGAG | CCATCTGGCAATGTGACTGC | 835 | 63 | |
RPGRIP1L | 6 | TTCACTGTGTGCAGAGGCACTT | TGCTCGACCTACTAACTGCTGTCA | 447 | 62 |