Table 2 of Chen, Mol Vis 2012; 18:1629-1639.


Table 2. Associations of the 12 candidate SNPs with POAG in the Hong Kong cohort.

        MAF (%)     Genotype counts †  
Region Gene dbSNP ID Allele * POAG Control p-value Odds ratio (95% CI) POAG Control p-value
1q43 ZP4 ‡ rs693421 T/G 45.9 46.5 0.89 0.98 (0.74–1.29) 37/95/52 48/118/64 0.98
2p16.3 LOC730100 ‡ rs1533428 T/C 44.3 38.4 0.10 1.27 (0.96–1.68) 34/95/55 39/98/92 0.088
2p16.3 LOC730100 ‡ rs12994401 T/C 36.9 34.3 0.46 1.12 (0.84–1.49) 22/91/70 28/101/100 0.49
9q33.1 TLR4 rs7037117 G/A 20.1 20.2 0.99 0.99 (0.71–1.40) 14/46/124 8/77/145 0.049
9q33.3 LMX1B rs944103 G/A 4.9 2.2 0.035 2.31 (1.06–5.08) 0/18/166 0/10/220 0.029
9q33.3 LMX1B rs7854658 T/C 0.3 0 0.44 - 0/1/183 0/0/230 0.44
9q33.3 LMX1B rs16929236 G/A 39.3 40.9 0.67 0.94 (0.71–1.24) 25/94/64 36/116/78 0.85
9q33.3 LMX1B rs10733682 G/A 26.9 25.3 0.63 1.09 (0.79–1.48) 11/77/96 21/74/134 0.10
9q33.3 LMX1B rs867559 T/C 30.2 29.8 0.94 1.02 (0.76–1.37) 17/77/90 21/95/114 0.99
10p12.31 PLXDC2 ‡ rs7081455 G/T 15.5 12.8 0.31 1.25 (0.84–1.85) 3/51/130 1/57/172 0.35
12q21.31 TMTC2 rs7961953 A/G 40.8 37.4 0.35 1.15 (0.87–1.53) 30/90/64 29/114/87 0.54
14q32.2 CYP46A1 rs754203 C/T 30.4 33.9 0.29 0.85 (0.63–1.15) 17/78/89 27/100/100 0.56