Table 3 of Park, Mol Vis 2012; 18:1526-1539.


Table 3. No significant associations identified between BMP4 SNPs and haplotypes and POAG except between the combined group HTG+OHT and BMP4 where there was a weak association.

A
SNP ID Allele Phenotype Case counts (%) Control counts (%) χ2 Uncorrected p- value
rs11623717 A HTG 197 (62.4) 219 (60.0) 0.63 0.4264
  A OHT 68 (61.8) 329 (60.0) 0.12 0,7274
  A HTG+OHT 395 (62.3) 329 (60.0) 0.64 0.4251
rs17563 A HTG 315 (61.5) 298 (58.0) 1.34 0.2467
  A OHT 60 (60.0) 298 (58.0) 0.14 0.7073
  A HTG+OHT 375 (61.3) 298 (58.0) 1.26 0.2610
rs2761884 T HTG 265 (50.2) 243 (44.3) 3.69 0.0548
  T OHT 56 (50.9) 243 (44.3) 1.59 0.2069
  T HTG+OHT 321 (50.3) 243 (44.3) 4.21 0.0401
rs8014071 C HTG 342 (64.8) 344 (63.0) 0.36 0.5463
  C OHT 74 (67.3) 344 (63.0) 0.72 0.3956
  C HTG+OHT 416 (65.2) 344 (63.0) 0.62 0.4312
rs8014363 A HTG 248 (49.6) 235 (47.6) 0.41 0.5222
  A OHT 52 (48.1) 235 (47.6) 0.01 0.9134
  A HTG+OHT 300 (49.3) 235 (47.6) 0.34 0.5585
B
Block Haplotype All subjects (%) Case Counts (%) Control Counts (%) χ2 p-Value
1
(tSNP 1 to 2) AA 57.9 59.1 56.9 0.53 0.4652
  GG 37.1 35.3 38.9 1.47 0.2255
  AG 3.2 3.2 3.2 0.00 0.9555
  GA 1.7 2.4 1.1 2.73 0.0985
2
(tSNP 3 to 5) TCA 46.1 48.0 44.3 1.55 0.2131
  GTG 35.6 34.2 36.9 0.87 0.3506
  GCG 14.9 13.8 5.9 0.92 0.3389
  GCA 2.2 1.6 2.8 1.86 0.1722
C
Block Haplotype All subjects (%) Case counts (%) Control counts (%) χ2 p-Value
1
(tSNP 1 to 2) AA 58.1 59.2 56.9 0.63 0.4270
  GG 37.0 35.5 38.9 1.47 0.2252
  AG 3.1 3.1 3.2 0.01 0.9151
  GA 1.7 2.3 1.1 2.62 0.1055
2
(tSNP 3 to 5) TCA 46.2 47.9 44.2 1.58 0.2084
  GTG 35.2 33.8 36.9 1.29 0.2565
  GCG 15.0 14.3 15.9 0.62 0.4322