Table 3 of Park, Mol Vis 2012; 18:1526-1539.
A | ||||||
---|---|---|---|---|---|---|
SNP ID | Allele | Phenotype | Case counts (%) | Control counts (%) | χ2 | Uncorrected p- value |
rs11623717 | A | HTG | 197 (62.4) | 219 (60.0) | 0.63 | 0.4264 |
A | OHT | 68 (61.8) | 329 (60.0) | 0.12 | 0,7274 | |
A | HTG+OHT | 395 (62.3) | 329 (60.0) | 0.64 | 0.4251 | |
rs17563 | A | HTG | 315 (61.5) | 298 (58.0) | 1.34 | 0.2467 |
A | OHT | 60 (60.0) | 298 (58.0) | 0.14 | 0.7073 | |
A | HTG+OHT | 375 (61.3) | 298 (58.0) | 1.26 | 0.2610 | |
rs2761884 | T | HTG | 265 (50.2) | 243 (44.3) | 3.69 | 0.0548 |
T | OHT | 56 (50.9) | 243 (44.3) | 1.59 | 0.2069 | |
T | HTG+OHT | 321 (50.3) | 243 (44.3) | 4.21 | 0.0401 | |
rs8014071 | C | HTG | 342 (64.8) | 344 (63.0) | 0.36 | 0.5463 |
C | OHT | 74 (67.3) | 344 (63.0) | 0.72 | 0.3956 | |
C | HTG+OHT | 416 (65.2) | 344 (63.0) | 0.62 | 0.4312 | |
rs8014363 | A | HTG | 248 (49.6) | 235 (47.6) | 0.41 | 0.5222 |
A | OHT | 52 (48.1) | 235 (47.6) | 0.01 | 0.9134 | |
A | HTG+OHT | 300 (49.3) | 235 (47.6) | 0.34 | 0.5585 | |
B | ||||||
Block | Haplotype | All subjects (%) | Case Counts (%) | Control Counts (%) | χ2 | p-Value |
1 | ||||||
(tSNP 1 to 2) | AA | 57.9 | 59.1 | 56.9 | 0.53 | 0.4652 |
GG | 37.1 | 35.3 | 38.9 | 1.47 | 0.2255 | |
AG | 3.2 | 3.2 | 3.2 | 0.00 | 0.9555 | |
GA | 1.7 | 2.4 | 1.1 | 2.73 | 0.0985 | |
2 | ||||||
(tSNP 3 to 5) | TCA | 46.1 | 48.0 | 44.3 | 1.55 | 0.2131 |
GTG | 35.6 | 34.2 | 36.9 | 0.87 | 0.3506 | |
GCG | 14.9 | 13.8 | 5.9 | 0.92 | 0.3389 | |
GCA | 2.2 | 1.6 | 2.8 | 1.86 | 0.1722 | |
C | ||||||
Block | Haplotype | All subjects (%) | Case counts (%) | Control counts (%) | χ2 | p-Value |
1 | ||||||
(tSNP 1 to 2) | AA | 58.1 | 59.2 | 56.9 | 0.63 | 0.4270 |
GG | 37.0 | 35.5 | 38.9 | 1.47 | 0.2252 | |
AG | 3.1 | 3.1 | 3.2 | 0.01 | 0.9151 | |
GA | 1.7 | 2.3 | 1.1 | 2.62 | 0.1055 | |
2 | ||||||
(tSNP 3 to 5) | TCA | 46.2 | 47.9 | 44.2 | 1.58 | 0.2084 |
GTG | 35.2 | 33.8 | 36.9 | 1.29 | 0.2565 | |
GCG | 15.0 | 14.3 | 15.9 | 0.62 | 0.4322 |