Table 3 of
Mitra, Mol Vis 2012; 18:1361-1378. Table 3 of
Mitra, Mol Vis 2012; 18:1361-1378.
Table 3. Showing the upregulated genes in Y79 cells grown with microparticles compared to cells without microparticles.
| Gene ID | Gene name | Chromosome location | Fold change | significant p-value <0.05 | Category |
|---|---|---|---|---|---|
| COL2A1 | Homo sapiens collagen, type II, alpha 1 [NM_001844] | chr12 | 3.9837 | 0.0007 | Extracellular matrix protein |
| COL1A1 | H.sapiens mRNA for prepro-alpha1(I) collagen. [Z74615] | 17q21.33 | 1.1663 | 0.0026 | Extracellular matrix protein |
| COL1A2 | Homo sapiens collagen, type I, alpha 2 (COL1A2), mRNA [NM_000089] | 7q21.3 | 1.5104 | 0.0496 | Extracellular matrix protein |
| COL13A1 | Homo sapiens collagen, type XIII, alpha 1 [NM_005203] | chr10 | 3.2391 | 0.0337 | Extracellular matrix protein |
| COL5A3 | Homo sapiens collagen, type V, alpha 3 [NM_015719] | chr19 | 1.6284 | 0.0145 | Extracellular matrix protein |
| COL16A1 | Homo sapiens collagen, type XVI, alpha 1 [NM_001856] | chr1 | 1.4568 | 0.0005 | Extracellular matrix protein |
| COL13A1 | Homo sapiens collagen, type XIII, alpha 1 [NM_005203] | chr10 | 1.3769 | 0.0337 | Extracellular matrix protein |
| COL23A1 | Homo sapiens collagen, type XXIII, alpha 1 [NM_173465] | chr5 | 1.206 | 0.0033 | Extracellular matrix protein |
| COL18A1 | Homo sapiens collagen, type XVIII, alpha 1 [NM_030582] | chr21 | 1.1288 | 0.0058 | Extracellular matrix protein |
| ITGB4 | Homo sapiens integrin, beta 4 [NM_000213] | chr17 | 1.6027 | 0.0008 | Extracellular matrix protein |
| CIB2 | Homo sapiens calcium and integrin binding family member 2 [NM_006383] | chr15 | 1.1749 | 0.0001 | Extracellular matrix protein |
| ITGA2 | Homo sapiens integrin, alpha 2 [NM_002203] | chr5 | 1.1054 | 0.0036 | Extracellular matrix protein |
| FNDC4 | Homo sapiens fibronectin type III domain containing 4 [NM_022823] | chr2 | 1.2791 | 0.005 | Extracellular matrix protein |
| LAMC2 | Homo sapiens laminin, gamma 2 [NM_005562] | chr1 | 1.0315 | 0 | Extracellular matrix protein |
| MYCN | Homo sapiens v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) [NM_005378] | chr2 | 1.271 | 0.0003 | oncogene |
| JUN | Homo sapiens jun oncogene [NM_002228] | chr1 | 1.108 | 0.0002 | oncogene |
| BCL2 | Human B-cell leukemia/lymphoma 2 (bcl-2) proto-oncogene [M13995] | chr18 | 1.2855 | 0.0007 | oncogene |
| ERBB3 | Homo sapiens v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) [NM_001982] | chr12 | 1.03 | 0.0148 | oncogene |
| MAFA | Homo sapiens v-maf musculoaponeurotic fibrosarcoma oncogene homolog [NM_201589] | chr8 | 1.3354 | 0.0009 | oncogene |
| ERG | Homo sapiens v-ets erythroblastosis virus E26 oncogene homolog (avian) [NM_004449] | chr21 | 1.421 | 0.0185 | oncogene |
| RAB34 | Homo sapiens RAB34, member RAS oncogene family [NM_031934] | chr17 | 3.3803 | 0.0001 | oncogene |
| RAB37 | Homo sapiens RAB37, member RAS oncogene family [NM_175738] | chr17 | 2.695 | 0.0017 | oncogene |
| RAB31 | Homo sapiens RAB31, member RAS oncogene family [NM_006868] | chr18 | 2.2873 | 0.0051 | oncogene |
| RAB13 | Homo sapiens RAB13, member RAS oncogene family [NM_002870] | chr1 | 1.5812 | 0.0182 | oncogene |
| RAB26 | Homo sapiens RAB26, member RAS oncogene family [NM_014353] | chr16 | 1.4142 | 0.0004 | oncogene |
| LCN2 | Homo sapiens lipocalin 2 (oncogene 24p3) [NM_005564] | chr9 | 1.2526 | 0.0029 | oncogene |
| KRAS | Homo sapiens v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog, mRNA (cDNA clone IMAGE:5301134). [BC029545] | chr12 | 1.3272 | 0.0059 | oncogene |
| RAB9B | Homo sapiens RAB9B, member RAS oncogene family, [BC018033] | chrX | 1.1607 | 0.0197 | oncogene |
| RAB32 | Homo sapiens RAB32, member RAS oncogene family [NM_006834] | chr6 | 1.102 | 0.0124 | oncogene |
| RAB36 | Homo sapiens RAB36, member RAS oncogene family [NM_004914] | chr22 | 1.101 | 0.0043 | oncogene |
| RAB31 | Homo sapiens RAB31, member RAS oncogene family [NM_006868] | chr18 | 1.0456 | 0.0051 | oncogene |
| ABCG1 | Homo sapiens ATP-binding cassette, sub-family G (WHITE), [NM_207630] | chr21 | 1.3562 | 0.0018 | ATP binding cassette |
| ABCG4 | Homo sapiens ATP-binding cassette, sub-family G (WHITE), [NM_022169] | chr11 | 1.2119 | 0.0006 | ATP binding cassette |
| ABCC4 | Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 4 [NM_005845] | chr13 | 1.0357 | 0.0104 | ATP binding cassette |
| ABCA3 | Homo sapiens ATP-binding cassette, sub-family A (ABC1), [NM_001089] | chr16 | 1.0245 | 0.0012 | ATP binding cassette |
| ABCC6 | Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), [NM_001079528] | chr16 | 1.0239 | 0.0033 | ATP binding cassette |
| IGFBP5 | Homo sapiens insulin-like growth factor binding protein 5 (IGFBP5), mRNA [NM_000599] | chr2 | 1.5048 | 0.0001 | Cell proliferation |
| MMP17 | Homo sapiens matrix metallopeptidase 17 (membrane-inserted) (MMP17), mRNA [NM_016155] | chr12 | 1.4897 | 0.0036 | invasion |
| MMP 13 |