Table 3 of
Liu, Mol Vis 2011; 17:885-893. Table 3 of
Liu, Mol Vis 2011; 17:885-893.
Table 3. Forty mapped genes with most highly expressed SAGE tags in the three HTM libraries (After the removal of ribosomal proteins).
| Tag | Tag counts (%†) | # of libraries | Unigene ID | Gene symbol | Gene description | Location |
|---|---|---|---|---|---|---|
| TTCATACACCTATCCCC | 3511 (1.17) | 3 | Hs.703108 | Transcribed locus | ||
| CCCTACCCTGTTACCTT | 1594 (0.53) | 3 | Hs.522555 | APOD | Apolipoprotein D | 3q26.2-qter |
| CACCTAATTGGAAGCGC | 1254 (0.42) | 3 | Hs.150324 | LOC100133315 | Similar to hCG1640299 | 11q13.4 |
| TGATTTCACTTCCACTC | 1143 (0.38) | 3 | Hs.634715 | Transcribed locus | ||
| GCCCCTGCTGACACGAG | 1090 (0.36) | 3 | Hs.433845 | KRT5 | Keratin 5 | 12q12-q13 |
| CAACTAATTCAATAAAA | 990 (0.33) | 3 | Hs.436657 | CLU | Clusterin | 8p21-p12 |
| TACCTGCAGAATAATAA | 977 (0.33) | 3 | Hs.416073 | S100A8 | S100 calcium binding protein A8 | 1q21 |
| GTTGTGGTTAATCTGGT | 775 (0.26) | 3 | Hs.534255 | B2M | Beta-2-microglobulin | 15q21-q22.2 |
| GTGGCCACGGCCACAGC | 721 (0.24) | 3 | Hs.112405 | S100A9 | S100 calcium binding protein A9 | 1q21 |
| GGAGTGTGCTCAGGAGT | 717 (0.24) | 3 | Hs.504687 | MYL9 | Myosin, light chain 9, regulatory | 20q11.23 |
| ACTTTTTCAAAAAAAAA | 648 (0.22) | 3 | Hs.349570 | NCRNA00182 | Non-protein coding RNA 182 | Xq13.2 |
| CACTACTCACCAGACGC | 612 (0.20) | 3 | Hs.631491 | Transcribed locus | ||
| TACCATCAATAAAGTAC | 605 (0.20) | 3 | Hs.544577 | GAPDH | Glyceraldehyde-3-phosphate dehydrogenase | 12p13 |
| ACCCTTGGCCATAATAT | 555 (0.19) | 3 | Hs.465808 | HNRNPM | Heterogeneous nuclear ribonucleoprotein M | 19p13.3-p13.2 |
| TACATAATTACTAATCA | 520 (0.17) | 3 | Hs.523789 | NEAT1 | Nuclear paraspeckle assembly transcript 1 (non-protein coding) | 11q13.1 |
| ACTAACACCCTTAATTC | 491 (0.16) | 3 | Hs.631494 | LOC100131754 | Similar to NADH dehydrogenase subunit 2 | 1p36.33 |
| GTAGGGGTAAAAGGAGG | 451 (0.15) | 3 | Hs.631492 | Transcribed locus | ||
| TGCCTGCACCAGGAGAC | 422 (0.14) | 3 | Hs.304682 | CST3 | Cystatin C | 20p11.21 |
| TAATAAAGAATTACTTT | 407 (0.14) | 3 | Hs.654570 | KRT15 | Keratin 15 | 17q21.2 |
| GAAATACAGTTGTTGGC | 388 (0.13) | 3 | Hs.654447 | CTSD | Cathepsin D | 11p15.5 |
| CAAGCATCCCCGTTCCA | 375 (0.13) | 2* | Hs.408470 | Transcribed locus | ||
| TACAGTATGTTCAAAGT | 370 (0.12) | 3 | Hs.518525 | GLUL | Glutamate-ammonia ligase (glutamine synthetase) | 1q31 |
| CATATCATTAAACAAAT | 360 (0.12) | 3 | Hs.479808 | IGFBP7 | Insulin-like growth factor binding protein 7 | 4q12 |
| ACACAGCAAGACGAGAA | 343 (0.11) | 3 | Hs.721789 | Transcribed locus | ||
| ATTTGAGAAGCCTTCGC | 336 (0.11) | 3 | Hs.703130 | Transcribed locus | ||
| CCACAGGAGAATTCGGG | 325 (0.11) | 3 | Hs.201446 | PERP | PERP, TP53 apoptosis effector | 6q24 |
| GTGCTGAATGGCTGAGG | 323 (0.11) | 3 | Hs.632717 | MYL6 | Myosin, light chain 6, alkali, smooth muscle and non-muscle | 12q13.2 |
| GTGTGTTTGTAATAATA | 296 (0.10) | 3 | Hs.369397 | TGFBI | Transforming growth factor, beta-induced, 68 kDa | 5q31 |
| CAGGTTTCATATTCTTT | 230 (0.08) | 3 | Hs.483444 | CXCL14 | Chemokine (C-X-C motif) ligand 14 | 5q31 |
| ACGGAACAATAGGACTC | 226 (0.08) | 3 | Hs.446429 | PTGDS | Prostaglandin D2 synthase 21 kDa (brain) | 9q34.2-q34.3 |
| GATGCCGGCACAAAACT | 223 (0.07) | 3 | Hs.146559 | ANGPTL7 | Angiopoietin-like 7 | 1p36.3-p36.2 |
| CCCCCTGGATCAGGCCA | 223 (0.07) | 3 | Hs.275243 | S100A6 | S100 calcium binding protein A6 | 1q21 |
| GATGTGCACGATGGCAA | 219 (0.07) | 3 | Hs.654380 | KRT14 | Keratin 14 | 17q12-q21 |
| TAAGTAGCAAACAGGGC | 214 (0.07) | 3 | Hs.643683 | ITM2B | Integral membrane protein 2B | 13q14.3 |
| TCGAAGCCCCCATCGCT | 211 (0.07) | 3 | Hs.631498 | LOC100293090 | Similar to DC24 | |
| GTGACCTCCTTGGGGGT | 210 (0.07) | 3 | Hs.433901 | COX8A | Cytochrome c oxidase subunit 8A (ubiquitous) | 11q12-q13 |
| CTAGCCTCACGAAACTG | 205 (0.07) | 3 | Hs.514581 | ACTG1 | Actin, gamma 1 | 17q25 |
| CCCTGGGTTCTGCCCGC | 205 (0.07) | 3 | Hs.433670 | FTL | Ferritin, light polypeptide | 19q13.33 |
| GACCAGCTGGCCAAGAC | 201 (0.07) | 3 | Hs.642660 | C10orf116 | Chromosome 10 open reading frame 116 | 10q23.2 |
| GTTACCACAAGCCACAA | 200 (0.07) | 3 | Hs.436037 | MYOC | Myocilin, trabecular meshwork inducible glucocorticoid response | 1q23-q24 |