Table 3 of Yip, Mol Vis 2011; 17:810-821.
Table 3. Primers for genotyping individual samples.
Gene, SNP | Primer sequences (5′>3′)* |
---|---|
MassArray iPLEX Gold assay (Sequenom) | |
COL11A1, rs17127311 | F: ACGTTGGATGCCTTTAGACTTCACATTCTC |
R: ACGTTGGATGGTATTAAGGAAAAAGCAAAGC | |
PE primer: cccacGGAAAAAGCAAAGCAAAGTGATG | |
COL18A1, rs11911327 | F: ACGTTGGATGTTTGCGTGGCTGCCTGGCCT |
R: ACGTTGGATGGACTCACAGATGCCTTTTGC | |
PE primer: caTTCCCACAGCGCTGC | |
COL18A1, rs2236454 | F: ACGTTGGATGCAGAAGCCAAGGACAGAAAC |
R: ACGTTGGATGATTGGGTCCGGACGGAATG | |
PE primer: aaagcGATCCAGGAAACTCCCC | |
COL18A1, rs2236457 | F: ACGTTGGATGGCTACAGGAGAGCACAGAAA |
R: ACGTTGGATGTCTATGACAGGAAAAGTCCC | |
PE primer: aacaCCAAAATATACCACTTGGGG | |
COL18A1, rs2236475 | F: ACGTTGGATGGCCAGTACCCAGGAGGAAG |
R: ACGTTGGATGTGACTGAGCCTAGCACACAC | |
PE primer: ggacGGCCCACTGCCCTGTCTGCC | |
Restriction fragment length polymorphism | |
COL18A1, rs2838922 | F: CTGCTTCCCCACCTTTTCAC |
R: (T)20 CTGAGATGTGAGAATCGCTCGA |