Table 9 of
Brooks, Mol Vis 2011; 17:3034-3054. Table 9 of
Brooks, Mol Vis 2011; 17:3034-3054.
Table 9. Top 25 transcripts upregulated in Nrl−/− retina compared to WT.
| Transcript | Gene ID | Gene title | WT FPKM | Nrl−/− FPKM | FC |
|---|---|---|---|---|---|
| NM_021272 | Fabp7 | Fatty acid binding protein 7 brain | 2.5 | 62.7 | 24.59 |
| NM_007538 | Opn1sw | Opsin 1 short-wave-sensitive | 149.1 | 2740.1 | 18.38 |
| NM_013927 | Cngb3 | Cyclic nucleotide gated channel β 3 | 4.7 | 85.6 | 18.13 |
| NM_033614 | Pde6c (isoform 1) | Phosphodiesterase 6C, cGMP-specific, cone, α prime | 12.6 | 199.5 | 15.78 |
| NM_001170959 | Pde6c (isoform 2) | Phosphodiesterase 6C, cGMP-specific, cone, α prime | 13.8 | 207.9 | 14.93 |
| NM_001038664 | Gngt2 (isoform 2) | Guanine nucleotide binding protein γ transducing activity polypeptide 2 | 22.6 | 337.8 | 14.93 |
| NM_001166651 | Klhl33 | Kelch-like 33 | 3 | 42.2 | 14.03 |
| NM_007627 | Cckbr | Cholecystokinin B receptor | 3.6 | 50.2 | 13.83 |
| NM_017474 | Clca3 | Chloride channel calcium activated 3 | 3.4 | 46.2 | 13.64 |
| NM_027132 | Otop3 | Otopetrin 1 homolog | 4.4 | 56.5 | 12.82 |
| NM_023121 | Gngt2 (isoform 1) | Guanine nucleotide binding protein γ transducing activity polypeptide 2 | 32 | 407.3 | 12.73 |
| NM_178747 | Gulo | L gulonolactone oxidase | 6.5 | 82.7 | 12.64 |
| NM_008141 | Gnat2 | Guanine nucleotide binding protein γ transducing activity polypeptide 2 | 70.5 | 861.1 | 12.21 |
| NM_145574 | Ccdc136 | Coiled-coil domain containing 136 | 17.6 | 213.8 | 12.13 |
| NM_009918 | Cnga3 | Cyclic nucleotide gated channel α 3 | 5 | 54.6 | 11 |
| NM_133205 | Arr3 | Arrestin 3, retinal | 69.6 | 652.6 | 9.32 |
| NM_184053 | Calu | Calumenin, a calcium ion binding protein | 14.8 | 131.6 | 8.82 |
| NM_183224 | Fam19a3 | Family with sequence similarity 19, member A3 | 30.7 | 266.9 | 8.69 |
| NM_010164 | Eya1 | Eyes absent 1 homolog | 1.4 | 12.6 | 8.63 |
| NM_001201378 | Ccdc136 | Coiled-coil domain containing 136 | 16.6 | 142 | 8.51 |
| NM_025659 | Abi3 | ABI gene family, member 3 | 1.4 | 11.5 | 8.28 |
| NM_013848 | Ermap | Erythroblast membrane-associated protein | 1.2 | 9.8 | 8 |
| NM_133167 | Parvb | Parvin β | 9 | 71.5 | 7.94 |
| NM_007419 | Adrb1 | Β-1 adrenergic receptor | 6.5 | 50.2 | 7.73 |
| NM_138653 | Bspry | B-box and SPRY-domain containing (zetin-1) | 1.4 | 10.6 | 7.73 |