Table 7 of
Brooks, Mol Vis 2011; 17:3034-3054. Table 7 of
Brooks, Mol Vis 2011; 17:3034-3054.
Table 7. Top 25 highly expressed transcripts in Nrl−/− retina based on RNA-seq data.
| Transcript ID | Gene ID | Gene name | WT FPKM | Nrl−/− FPKM |
|---|---|---|---|---|
| NM_007538 | Opn1sw | Opsin 1 short-wave-sensitive | 149.1 | 2740.1 |
| NM_015745 | Rbp3 | Retinol binding protein 3 | 885.3 | 1024 |
| NM_008141 | Gnat2 | Guanine nucleotide binding protein a transducing 2 | 70.5 | 861.1 |
| NM_013530 | Gnb3 | Guanine nucleotide binding protein β polypeptide 3 | 103.3 | 786.9 |
| NM_133205 | Arr3 | Arrestin 3, retinal | 69.6 | 652.6 |
| NM_023898 | Pde6h | Phosphodiesterase 6H cGMP-specific cone g | 91.1 | 634.7 |
| NM_013415 | Atp1b2 | ATPase Na+K+ transporting β 2 polypeptide | 369.6 | 608.9 |
| NM_011428 | Snap25 | Synaptosomal-associated protein 25 kDa | 471.1 | 576 |
| NM_012065 | Pde6g | Phosphodiesterase 6G cGMP-specific rod g | 1269.5 | 552.6 |
| NM_009118 | Sag | S-antigen retina and pineal gland | 765.4 | 548.7 |
| NM_008131 | Glul | Glutamate-ammonia ligase | 545 | 530.1 |
| NM_053245 | Aipl1 | Aryl hydrocarbon receptor interacting protein-like 1 | 313 | 515.6 |
| NM_009305 | Syp | Synaptophysin | 326.3 | 505 |
| NM_008189 | Guca1a | Guanylate cyclase activator 1A (retina) | 306.6 | 487.8 |
| NM_011099 | Pkm2 | Pyruvate kinase muscle | 604.7 | 467.9 |
| NM_013494 | Cpe | Carboxypeptidase E | 337.8 | 439.6 |
| NM_023121 | Gngt2 | Guanine nucleotide binding protein g transducing activity polypeptide 2 | 32 | 407.3 |
| NM_011676 | Unc119 | Unc-119 homolog | 719.1 | 407.3 |
| NM_021273 | Ckb | Creatine kinase brain | 290 | 398.9 |
| NM_007450 | Slc25a4 | Solute carrier family 25 member 4 | 313 | 385.3 |
| NM_008938 | Prph2 | Peripherin 2 | 1448.2 | 367.1 |
| NM_026358 | 4930583H14Rik | Unknown | 407.3 | 362 |
| NM_016774 | Atp5b | ATP synthase H+ transporting mitochondrial F1 complex β polypeptide | 315.2 | 352.1 |
| NM_001038664 | Gngt2 | Guanine nucleotide binding protein γ transducing activity polypeptide 2 | 22.6 | 337.8 |
| NM_010106 | Eef1a1 | Eukaryotic translation elongation factor 1 α 1 | 265 | 328.6 |