Table 6 of
Brooks, Mol Vis 2011; 17:3034-3054. Table 6 of
Brooks, Mol Vis 2011; 17:3034-3054.
Table 6. Top 25 highly expressed transcripts in wild-type retina based on RNA-seq data.
| Transcript ID | Gene ID | Gene name | WT FPKM | Nrl−/− FPKM |
|---|---|---|---|---|
| NM_145383 | Rho | Rhodopsin | 8135.4 | 1.7 |
| NM_008140 | Gnat1 | Guanine nucleotide binding protein γ transducing activity polypeptide 1 | 4011.7 | 2 |
| NM_008938 | Prph2 | Peripherin 2 | 1448.2 | 367.1 |
| NM_012065 | Pde6g | Phosphodiesterase 6G cGMP-specific rod γ | 1269.5 | 552.6 |
| NM_009073 | Rom1 | Retinal outer segment membrane protein 1 | 948.8 | 229.1 |
| NM_015745 | Rbp3 | Retinol binding protein 3 | 885.3 | 1024 |
| NM_009118 | Sag | S-antigen retina and pineal gland | 765.4 | 548.7 |
| NM_011676 | Unc119 | Unc-119 homolog | 719.1 | 407.3 |
| NM_024458 | Pdc | Phosducin | 689.8 | 302.3 |
| NM_009038 | Rcvrn | Recoverin | 643.6 | 288 |
| NM_011099 | Pkm2 | Pyruvate kinase muscle | 604.7 | 467.9 |
| NM_001159730 | Pdc | Phosducin | 580 | 250.7 |
| NM_146079 | Guca1b | Guanylate cyclase activator 1B | 552.6 | 68.1 |
| NM_008131 | Glul | Glutamate-ammonia ligase | 545 | 530.1 |
| NM_001136074 | Nrl | Neural retina leucine zipper | 545 | 1.9 |
| NM_001160017 | Gnb1 | Guanine nucleotide binding protein β polypeptide 1 | 487.8 | 24.4 |
| NM_011428 | Snap25 | Synaptosomal-associated protein 25 kDa | 471.1 | 576 |
| NM_146086 | Pde6a | Rod photoreceptor cGMP phosphodiesterase a subunit | 433.5 | 35.8 |
| NM_026358 | 4930583H14Rik | Unknown | 407.3 | 362 |
| NM_013415 | Atp1b2 | ATPase Na+K+ transporting β 2 polypeptide | 369.6 | 608.9 |
| NM_144921 | Atp1a3 | Α 3 subunit of Na+K+ ATPase | 367.1 | 286 |
| NM_008806 | Pde6b | Phosphodiesterase 6B cGMP-specific rod β | 364.6 | 16.2 |
| NM_001160016 | Gnb1 | Guanine nucleotide binding protein β polypeptide 1 | 352.1 | 18.1 |
| (isoform 2) | ||||
| NM_008142 | Gnb1 | Guanine nucleotide binding protein β polypeptide 1 | 349.7 | 17.9 |
| (isoform 1) | ||||
| NM_010314 | Gngt1 | Guanine nucleotide binding protein g transducing activity polypeptide 1 | 340.1 | 203.7 |