Table 4 of Brooks, Mol Vis 2011; 17:3034-3054.


Table 4. Summary of transcript isoforms detected by BWA/ANOVA and TopHat/Cufflinks workflows

Analysis BWA/ANOVA TopHat/Cufflinks
Total detected transcripts 16,014 34,115
mRNA 15,142 32,001
mRNA DETs 1,422 3,258