Table 3 of Brooks, Mol Vis 2011; 17:3034-3054.


Table 3. Summary of Illumina base calling and alignments

Genotype WT WT WT Nrl−/− Nrl−/− Nrl−/−
  Sample 1 Sample 2 Sample 3 Sample 1 Sample 2 Sample 3
Total reads 35,872,080 41,785,800 49,076,400 46,689,240 48,480,240 48,656,040
PF Reads 29,603,280 33,251,160 37,642,800 36,472,800 37,119,960 36,823,320
  82.7% 79.7% 76.9% 78.2% 76.7% 75.8%
BWA alignments 24,992,271 27,922,997 32,085,799 30,960,565 31,374,578 31,257,335
TopHat alignments 30,769,939 34,177,120 39,222,596 38,289,469 38,744,790 38,593,533