Table 2 of Mookherjee, Mol Vis 2011; 17:2618-2627.
SNP ID and location in the gene |
Primer sequences |
Annealing temperature |
Restriction enzyme |
RFLP pattern |
---|---|---|---|---|
rs1971050 (c.330+925 C>T) | 5′-GAGGTGAAGAGCAATTGGGTTTCTC-3′ | 60 °C | AluI | C: 203 bp, 35 bp T: 238 bp |
5′-GCAGTGTCAGGAAAGACACTGTACC-3′ | ||||
rs1993465 (c.459+183A>G) | 5′-TTCTTTACCCAGCACACTCTGGAA-3′ | 56 °C | HinfI | G: 147 bp, 25 bp A: 172 bp |
5′-TTTTGAAGAAGGTCTCCAAGTGATT-3′ | ||||
rs13153937 (c.460–112A>G) | 5′-GCAGATGAACATGCCTGGTCCCTTA-3′ | 58 °C | BciVI | G: 397 bp A: 336 bp, 61 bp |
5′-ACAGGCAAAATCTCTGGCATAG-3′ | ||||
rs10038177 (c.710+30C>T) | 5′-GCCTCTCATTTATTTTATTTCTCAAGG-3′ | 62 °C | AluI | C: 338 bp, 120 bp T: 458 bp |
5′-CCTCTGATACAGGGGACCAACTG-3′ | ||||
rs11241095 (c 772G>A, I264V) | 5′-GAGGATGGGATGTTGACTGGCAGA-3′ | 50 °C | HpaI | G: 268 bp, 23 bp A: 293 bp |
5′-ATAACTTGACCTGACATAAGGTTAA-3′ | ||||
rs10043631 (c.1494+90C>T) | 5′-TCCCTAGTGTCTGAAATATTGGATGC-3′ | 50 °C | DdeI | C: 328 bp, 25 bp T: 353 bp |
5′-TAAAATGTTAAACTACGTTTTCTCA-3′ | ||||
rs10038058 (c.1494+143G>A) | 5′-TCTTGTTATACTCAAGGTTTCTCATCA-3′ | 50 °C | ApoI | G: 191 bp, 63 bp A: 102 bp, 89 bp, 63 bp |
5′-AGAATAGTCTTTTGAACAAATAGTGCTG-3′ | ||||
rs10491424 (c.1965–905C>T) | 5′-CTATCTCCTCTTAAGTGGTTAATGAATT-3′ | 58 °C | EcoRI | C: 147 bp, 24 bp T: 171 bp |
5′-ATGTGGTGGATAAGGCAAGG-3′ | ||||
rs17553936 (c.1965–30A>G) | 5′-TGGTGACTTTCTGATCAATGCTGGTG-3′ | 62 °C | CvIQI | G: 308 bp, 120 bp A: 428 bp |
5′-TCAAGCAGATGTTGAATCACTCAGA-3′ | ||||
rs13186912 (c.2181A>T; V727V) | 5′-GGTGTTTTGGGTCTAGTGATGG-3′ | 56 °C | BstBI | A: 234 bp T: 210 bp, 24 bp |
5′ -CACTTGGTTCTACTGTTTCTTTCGA-3′ |