Table 2 of
Awadalla, Mol Vis 2011; 17:2248-2254. Table 2 of
Awadalla, Mol Vis 2011; 17:2248-2254.
Table 2. Genotype counts (n) and frequencies (%) of HGF SNPs in Nepalese samples and p-value for association under the allelic model, bold p-values are considered significant after bonferroni correction (p<0.004).
| SNP | Genotype | Case n (%) | Control n (%) | p-value | Adjusted p-value* | Odds ratio (95% CI) |
|---|---|---|---|---|---|---|
| rs5745752 | AA | 16 (16.0) | 30 (15.0) | 0.754 | 0.694 | 0.9 (0.7–1.3) |
| AG | 44 (41.0) | 90 (44.0) | ||||
| GG | 46 (43.0) | 82 (41.0) | ||||
| rs5745718 | AA | 5 (4.0) | 3 (1.0) | 0.002 | 0.003 | 2.2 (1.3–3.5) |
| AC | 27 (26.0) | 30 (15.0) | ||||
| CC | 71 (70.0) | 163 (84.0) | ||||
| rs12536657 | AA | 5 (4.0) | 3 (1.0) | 0.002 | 0.009 | 2.1 (1.3–3.3) |
| AG | 29 (28.0) | 34 (17.0) | ||||
| GG | 71 (68.0) | 165 (82.0) | ||||
| rs2286194 | AA | 4 (4.0) | 8 (4.0) | 0.480 | 0.453 | 0.9 (0.6–1.3) |
| AT | 28 (26.0) | 62 (31.0) | ||||
| TT | 74 (70.0) | 132 (65.0) | ||||
| rs5745692 | CC | 0 (0.0) | 1 (1.0) | 0.139 | 0.998 | 0.2 (0.03–1.9) |
| CG | 1 (1.0) | 6 (3.0) | ||||
| GG | 105 (99.0) | 196 (96.0) | ||||
| rs12540393 | CC | 5 (5.0) | 3 (3.0) | 0.0006 | 0.001 | 2.2 (1.4–3.5) |
| CT | 34 (32.0) | 37 (18.0) | ||||
| TT | 67 (63.0) | 162 (79.0) | ||||
| rs17427817 | CC | 5 (5.0) | 3 (2.0) | 0.0006 | 0.001 | 2.2 (1.4–3.5) |
| CG | 34 (32.0) | 37 (18.0) | ||||
| GG | 67 (63.0) | 162 (80.0) | ||||
| rs12707453 | GG | 3 (3.0) | 12 (6.0) | 0.749 | 0.784 | 0.9 (0.6–1.4) |
| GA | 42 (40.0) | 73 (36.0) | ||||
| AA | 60 (57.0) | 117 (58.0) | ||||
| rs5745616 | AA | 16 (15.0) | 21 (10.0) | 0.540 | 0.469 | 1.1 (0.8–1.6) |
| AG | 43 (41.0) | 91 (45.0) | ||||
| GG | 47 (44.0) | 90 (45.0) | ||||
| rs3735520 | TT | 15 (14.0) | 38 (19.0) | 0.236 | 0.134 | 0.8 (0.6–1.1) |
| TC | 49 (47.0) | 96 (47.0) | ||||
| CC | 41 (39.0) | 68 (34.0) | ||||
| rs6942495 | GG | 22 (21.0) | 51 (26.0) | 0.745 | 0.878 | 0.9 (0.7–1.3) |
| GC | 56 (53.0) | 95 (47.0) | ||||
| CC | 27 (26.0) | 55 (27.0) | ||||
| rs17501080 | CC | 3 (3.0) | 2 (1.0) | 0.569 | 0.863 | 1.2 (0.7–2.0) |
| CA | 19 (18.0) | 38 (19.0) | ||||
| AA | 83 (79.0) | 162 (80.0) |