Table 2 of Rydzanicz, Mol Vis 2011; 17:2028-2039. Table 2 of Rydzanicz, Mol Vis 2011; 17:2028-2039.
Table 2. Linkage analysis results: Three susceptibility loci Identified in HM-32.
| Non-parametric | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cytogenetic | Decode map (cM) | SNP marker | Physpos (bp) | Parametric LOD | npl_Zmean | NPL | p value | npl LOD |
| 7p22.1 | 9.20 | rs11977885 | 4653045 | 0.904 | 4.26 | 4.26 | 0.013 | 1.09 |
| 7p22.1 | 11.93 | rs1640233 | 5609671 | 1.316 | 8.19 | 8.19 | 0.006 | 1.36 |
| 7p22.1 | 12.73 | rs12538002 | 6577858 | 1.317 | 8.26 | 8.26 | 0.006 | 1.36 |
| 7p21.3 | 13.50 | rs7807121 | 7520065 | 1.319 | 8.25 | 8.25 | 0.006 | 1.36 |
| 7p21.3 | 16.76 | rs10247446 | 8444937 | 1.326 | 8.21 | 8.21 | 0.006 | 1.36 |
| 7p21.3 | 18.43 | rs13227829 | 9071553 | 1.201 | 8.24 | 8.24 | 0.006 | 1.36 |
| 7p21.3 | 20.05 | rs7805053 | 9690241 | 1.035 | 8.25 | 8.25 | 0.006 | 1.36 |
| 7p21.3 | 22.15 | rs17164201 | 11282715 | 0.928 | 8.05 | 8.05 | 0.006 | 1.35 |
| 7p21.3 | 23.26 | rs9655091 | 11892872 | 0.925 | 7.93 | 7.93 | 0.006 | 1.34 |
| 7p21.3 | 24.37 | rs10249671 | 12514442 | 0.920 | 7.86 | 7.86 | 0.006 | 1.34 |
| 7p21.3 | 25.26 | rs758401 | 13135380 | 0.914 | 7.78 | 7.78 | 0.007 | 1.34 |
| 7p21.2 | 26.16 | rs2190321 | 13750336 | 0.907 | 7.67 | 7.67 | 0.007 | 1.33 |
| 7p21.2 | 27.24 | rs1019906 | 14369309 | 0.892 | 7.46 | 7.46 | 0.007 | 1.32 |
| 7p21.1 | 29.23 | rs17336581 | 15658618 | 0.803 | 6.37 | 6.37 | 0.008 | 1.25 |
| 7p21.1 | 30.28 | rs538537 | 16584971 | 0.609 | 4.54 | 4.54 | 0.012 | 1.12 |
| 7p21.1 | 30.63 | rs10950639 | 16892043 | −2.812 | 1.51 | 1.51 | 0.040 | 0.70 |
| 7p13 | 68.71 | rs11770622 | 46163791 | −2.225 | 1.57 | 1.57 | 0.040 | 0.71 |
| 7p12.3 | 69.09 | rs1404719 | 46782062 | 1.536 | 5.87 | 5.87 | 0.009 | 1.22 |
| 7p12.3 | 69.50 | rs2462634 | 47400153 | 2.082 | 7.63 | 7.63 | 0.007 | 1.33 |
| 7p12.3 | 70.23 | rs2348666 | 48045318 | 2.115 | 8.11 | 8.11 | 0.006 | 1.35 |
| 7p12.3 | 70.46 | rs6965361 | 48664499 | 2.117 | 8.14 | 8.14 | 0.006 | 1.35 |
| 7p12.2 | 71.75 | rs1532989 | 49912251 | 2.121 | 8.21 | 8.21 | 0.006 | 1.36 |
| 7p12.2 | 72.50 | rs7808025 | 50544397 | 2.123 | 8.23 | 8.23 | 0.006 | 1.36 |
| 7p12.1 | 73.28 | rs10231416 | 51181101 | 2.123 | 8.22 | 8.22 | 0.006 | 1.36 |
| 7p12.1 | 74.18 | rs637056 | 51797737 | 2.122 | 8.22 | 8.22 | 0.006 | 1.36 |
| 7p12.1 | 74.87 | rs12718627 | 52417115 | 2.122 | 8.21 | 8.21 | 0.006 | 1.36 |
| 7p11.2 | 75.80 | rs7789754 | 54015519 | 2.114 | 8.06 | 8.06 | 0.006 | 1.35 |
| 7p11.2 | 76.05 | rs13242670 | 54673192 | 2.110 | 7.98 | 7.98 | 0.006 | 1.35 |
| 7p11.2 | 76.76 | rs6966222 | 55301496 | 2.031 | 6.65 | 6.65 | 0.008 | 1.27 |
| 7p11.2 | 77.54 | rs13222366 | 55967196 | 1.838 | 4.23 | 4.23 | 0.013 | 1.09 |
| 7p11.2 | 77.82 | rs6945964 | 56654367 | 1.467 | 1.76 | 1.76 | 0.030 | 0.75 |
| 7p11.2 | 78.04 | rs9719399 | 57159680 | −1.882 | −0.09 | −0.09 | 0.500 | 0.00 |
| 12p12.3 | 32.95 | rs11610238 | 14866988 | 1.773 | 7.44 | 7.44 | 0.007 | 1.32 |
| 12p12.3 | 33.22 | rs11056500 | 15500344 | 1.808 | 7.92 | 7.92 | 0.006 | 1.34 |
| 12p12.3 | 33.98 | rs1799465 | 16176985 | 1.811 | 7.96 | 7.96 | 0.006 | 1.35 |
| 12p12.3 | 35.26 | rs10772967 | 16852267 | 1.814 | 8.02 | 8.02 | 0.006 | 1.35 |
| 12p12.3 | 35.32 | rs1163932 | 17492875 | 1.814 | 8.02 | 8.02 | 0.006 | 1.35 |
| 12p12.3 | 35.75 | rs7300713 | 18175590 | 1.814 | 8.02 | 8.02 | 0.006 | 1.35 |
| 12p12.3 | 36.22 | rs7961337 | 18855833 | 1.814 | 8.02 | 8.02 | 0.006 | 1.35 |
| 12p12.3 | 36.71 | rs12824219 | 19488622 | 1.814 | 8.02 | 8.02 | 0.006 | 1.35 |
| 12p12.2 | 37.96 | rs10770612 | 20121906 | 1.791 | 8.01 | 8.01 | 0.006 | 1.35 |
| 12p12.2 | 39.26 | rs2417862 | 20761532 | 1.727 | 7.79 | 7.79 | 0.007 | 1.34 |
| 12p12.1 | 39.53 | rs12826226 | 21414787 | 1.706 | 7.64 | 7.64 | 0.007 | 1.33 |
| 12p12.1 | 41.78 | rs16915844 | 22053236 | 1.494 | 6.23 | 6.23 | 0.008 | 1.24 |
| 12p12.1 | 42.37 | rs4963842 | 22727319 | 1.378 | 5.39 | 5.39 | 0.010 | 1.19 |
| 12p12.1 | 42.95 | rs10770974 | 23348839 | 1.251 | 4.63 | 4.63 | 0.011 | 1.12 |
| 12p12.1 | 44.94 | rs574115 | 24383760 | 0.442 | 2.01 | 2.01 | 0.030 | 0.80 |
| 12p12.1 | 45.59 | rs10842388 | 24693591 | −2.603 | 1.22 | 1.22 | 0.040 | 0.63 |