Table 1 of Xu, Mol Vis 2011; 17:1537-1552.


Table 1. Primer information for the USH2A gene sequencing.

Primer Forward sequence (5′-3′) Reverse sequence (5′-3′) Products (bp) Tm (°C)
Exon 2 GCCTGGGATGAGCTTCAG GGTTTGGAATTCAGGCTGA 840 62
Exon 3 CACCACTGTAACTGCACAATACC CTGCTGCAGATTTTGTGAGTAGA 345 64
Exon 4 GTCTTCCCAGCTGAACAAAGTA GTGGTAATTTGTTCAGTAGCCCTAG 382 60
Exon 5 GTCAGGTATTGCTTGGTAAACAG CAGCATTTATCCTTTCGGTTC 173 62
Exon 6 CGAGTGACATTCATTTGTAACGA GGCATTTGTTGCAATAACCA 437 58
Exon 7 TTTGAATCTAATAATTCCATGGTTTG TGGTGGTGAAGGGAAGTCTC 372 58
Exon 8 CAACATTTTGATTTCTGTTTTGC TGCTCTGACATCTTAATGTGCT 370 62
Exon 9 CACACAATGCATATAGTCCTAGG TGTTAGGCCAAGATTAAGTTCAT 267 62
Exon 10 TGATATGTGCTTTACTTCTGGTG GCATTGTAGATAGAAGCACACAG 356 62
Exon 11 TGGCAGGTAGAGATGAAAGG GCAAATGCAGTCTTCAATTCTAC 371 62
Exon 12 CCCTGTCTTGTACCTAATGAGC TTCCAGATGGTAATAGAGATGTGA 323 62
Exon 13 GCAGTAGCATTGTTTGTGTCTC GTAGAAGCCACAAACCAGAAAC 816 58
Exon 14 GGGAATTAGTGCCTTGGTAGAG GAAGTTATTGCTTTGCAACTGC 379 64
Exon 15 AAGCCGTCTTACTCTACAATGCT TTCTGATGGGTTCTAAATGGAG 360 58
Exon 16 GCAATCCTGAATCAGAAAGACC CCACAACAGCATTTATCCTCAA 354 64
Exon 17 GAGAGGAAAGCAGTTAGCAATG GATTCTCATTCATGTCTTGACCA 626 64
Exon 18 AAGTAACCCCTTTGTCTGATGAGT GGAAACATTTGCATTCAGAGG 378 62
Exon 19 TCAGAAACTAAATGAATGTGTGA TGCCCTGTTTAATCAATATAGAG 379 60
Exon 20 TGGTGGTTGGCAATAATTCC GAGTTAGTGAGGGAGGAGAAGACA 381 64
Exon 21 AGCCATACAGATACTTGAAACC GCTATCAAAGGGCTGAATTAG 501 62
Exon 22 CCATGCGAGTATATTGCTGTG GCTGAGGGCAAGTCACATTAC 451 62
Exon 23 CAGGAAAGCCAGAATGATGC CCCAAAGGCAAATTCAACAG 447 58
Exon 24 CAGGCAATGAGGAGAGAGGA CCTAAAGGAAATTTTTGGCACA 371 58
Exon 25 TGAATCATTAAGAGGCTTGCAG TGTGTGCACCATTGGAATAAC 459 58
Exon 26 GGTCTTTCTGTCACTTCTGTGC TTCAGTTATCAGGCGTGGTG 722 62
Exon 27 TGCTTTCAGGGAACTGTTTTG GGTGCTGCTTTTAGCCTGAG 497 62
Exon 28,29 TGCTGCAGAGGACAAAAATG GCTTCAGGGTAATAGTCCTTCC 579 62
Exon 30 TGCGGCCATTAAAAGTGAAG TGCAGGCTTCCACTACTTTAG 434 58
Exon 31 GCAGAAAGGGAGGAAAATGAC CAAATTAGGTTGGGGTTTGC 392 64
Exon 32 TGATTTATTGGTTTGGGTCTG GCATTCTTGATTAAATTTGCAG 357 58
Exon 33 TGAAGCATCCTATATGTTATTGC CCTCCCCTGATTGAACTCAC 392 58
Exon 34 ATTTCCTTTTTGCCCCTCAG AGGATGGGAAGAGAGTTTTCAG 512 56
Exon 35 TTGGGGAAGTAAAGGTAGCAC CCACAATCTCCCCAACTAGAG 431 62
Exon 36 AAATCACATCAAGAGTGCTTGC CCTGCTTGAAAGGCTAGCTG 352 62
Exon 37 TGTGCTTTGATCCTGCTGAC AACCAACATCTGTGGCTAAAAG 431 60
Exon 38 AATTGGCCAGGTCAACTCAG TGTGAGGTGGATGAAAGCAG 614 64
Exon 39 CAGGAGTTCAGGAATGAAAATG AAGTTTCAGTGGGAAGAAATCC 526 54
Exon 40 GAGATCTCATTTGATGGCAGAA GGCTCATTTCTTTGCTTTGG 373 58
Exon 41 TGGCCTTTACCAAGTGTTCA AAGGCCAAAACCCAGTTTCT 890 54
Exon 42 GCAAAATTCTAGGCCTCGTG AAAGCCTCCTTCATTTCCCTAC 492 62
Exon 43 ATGCCACAGAACAGCCTGAG AGCCGTGACAAAGGCAATAG 469 62
Exon 44 TTTTGTAGAGGGGTGGAAGG TGTGTACATGGGGGAGGTTC 367 58
Exon 45 CATTTCCAAAACAAAGGCTCTC TTAGCCTCCACCCCCTTC 464 58
Exon 46 TCATCATATCCCACTGGTCAC CCCTTCTCTCTTTTCCCTTCC 599 54
Exon 47 AGGGAAGGTGGGATTCAGAC TGTCATGGCTGAGAGGATACC 280 59
Exon 48 CCTCACGCCATGTGTTATTC CCTTTCTTTTCCGTGGAGTC 530 54
Exon 49 TCGAATGATCCTGGAAAATACA TTGTTGAGAGGGAGGTGTTTG 432 56
Exon 50 ACCTGTAAGTTGCCATGTGTG TTTGGAGGACATGACCTTTTC 678 54
Exon 51 ATTTCAGCAACTGCCTGAGC AAAGCTTCCCTGAGAACAGC 552 62
Exon 52 TGGGAAGCTGCAAAACTG GGCCTCAAAGTATGATGGAATG 564 54
Exon 53 TCCGTATCCCTGCATCT GGTTAGATGCATAGGGCAAT 500 56
Exon 54 ATTGCATTTCTTCCGAACAC TCTCTCCTTCCAGCCATAGG 428 54
Exon 55 AAAGGGAAATGCTTCTCCAAG CCCCCTAACCACAATGACAG 396 62
Exon 56 AGCCTCTTATGAGGTTCAGACC CAAGCCTGAAGAATGGGAAC 422 54
Exon 57 GGGGATGGTGTGACTTTTG ATGGCCAATGAATGAGGAAG 382 56
Exon 58 GGCAAAGAGTTTGCAATTTGTC TTTATCCAGGAGACCGACTATG 399 62
Exon 59 CAAACATTTGTTGCCCATTC GCCAGACTGTGATTTTTCTGG 488 54
Exon 60 TGCAAAAGGACAGGTTAAAA GATTCTGCTGTGTTGGAGCA 343 54
Exon 61 TGACACCAGGAAGAAACAGC TTATCCCCGTGACTACATTGC 638 54
Exon 62 TTTGGCCATGAGGTTCAGAG TGAAGGGAGTTTTCCCACAG 417 60
Exon 63-A AGGTTAAAAAGGGGCTAAGT GGATATCACAGGTGGAGAGAGA 600 54
Exon 63-B ATTCAGCTGGGCATACCTGT CCATTGTCCAGGCAGATTTT 591 59
Exon 63-C GAATGGAGGTTGCACAGCTA GGCTCAGGCAATAGAAAGGTC 600 58
Exon 64 AATCTCGGCTCACTGCAAG AGTGCCTTTTCAAATTGTGC 602 62
Exon 65 TGCTTTTGGTTGCCAATTTC ACCGTAGAGCAACTGAGAACAG 440 58
Exon 66 TGTAGGAGGTGGGATCTTGG CTGGGGAGTGCCAGGTAG 445 60
Exon 67 GAGCAGTTTCCTGCAAATGG TCCCCACAAGAAAATCCTTC 579 56
Exon 68 GTTTGGATTGGTTCGGTTTG CGTAAAGCTGGGGAACAGAG 344 60
Exon 69 CGTCATAACTTGCTTTGGAATC CAACACTTGGCACAATTTCTTC 338 60
Exon 70 ATCAAATAGCAGGGCCAGAG CCTCTCTTGGTCCCCACAC 462 60
Exon 71 GCTGCTAAATTCTGTAGGTGACA TAAGTGCTCAGAGGCGAGTG 499 56
Exon 72 TGAGGCTTCTGAGGCTTAG CTGCCAAACAGAACCAAGTG 651 58