Table 5 of Freeman, Mol Vis 2011; 17:1355-1372.

Table 5. Genes displaying cis-acting QTLs on Chr 15 between 82 and 92 Mb.


ID
Symbol
Description		 ProbeSetID /
RecordID		 Probe
Target
Chr
Mb		 UniGene
ID		 QTL
Chr		 QTL
Mb		 Locus
at Peak		 Max
LRS		 Mean
Expression
1 Phf5a PHD finger protein 5A ILMN_1251761 3′ UTR 15 81.7 Mm.271715 15 82.3 D15Mit189 32.6 13.6
2 Aco2 aconitase 2, mitochondrial ILMN_1235786 exon 19 15 81.7 Mm.154581 15 79.7 rs4230879 15.6 12.4
3 Polr3h polymerase (RNA) III (DNA directed) polypeptide H ILMN_1218993 3′ UTR 15 81.7 Mm.215115 15 79.5 rs4230869 21 10.9
4 Pmm1 phosphomannomutase 1 ILMN_2611027 exon 7 15 81.8 Mm.18939 15 82.3 D15Mit189 30.4 12.3
5 Pmm1 phosphomannomutase 1 ILMN_1223710 5′ UTR 15 81.8 Mm.18939 15 83.9 rs13482681 16.8 10.3
6 Xrcc6 X-ray repair complementing defective repair in Chinese hamster cells 6 ILMN_1247814 exon 13 15 81.9 Mm.288809 15 79.7 rs4230879 18.6 9.6
7 Xrcc6 X-ray repair complementing defective repair in Chinese hamster cells 6 ILMN_2862619 3′ UTR 15 81.9 Mm.288809 15 79.5 rs4230869 42.6 12
8 Serhl serine hydrolase-like ILMN_2614351 exon 11 15 82.9 Mm.379160 15 82.9 rs13482677 130.8 7.7
9 Mcat malonyl CoA:ACP acyltransferase (mitochondrial) ILMN_2619455 3′ UTR 15 83.4 Mm.37560 15 82.9 rs13482677 97.8 10.6
10 Mcat malonyl CoA:ACP acyltransferase (mitochondrial) ILMN_2927635 exon 3 15 83.4 Mm.37560 15 83.9 rs13482681 76 7.6
11 Phf21b PHD finger protein 21B ILMN_1229266 3′ UTR 15 84.6 Mm.101022 15 87.9 rs3707587 28.9 11.6
12 Fbln1 fibulin 1 ILMN_2602770 3′ UTR 15 85.1 Mm.297992 15 82.9 rs13482677 24.1 7.6
13 2210021J22Rik RIKEN cDNA 2210021J22 gene ILMN_2781118 exon 4 15 85.6 Mm.33706 15 83.9 rs13482681 36.4 8.1
14 Tbc1d22a TBC1 domain family, member 22a ILMN_2767791 3′ UTR 15 86.3 Mm.28904 15 85.5 rs13482686 30.3 11.4
15 Zbed4 zinc finger, BED domain containing 4 ILMN_2418222 3′ UTR 15 88.6 Mm.397231 15 87.3 rs6405854 17.6 9.4
16 Arsa arylsulfatase A ILMN_1225552 3′ UTR 15 89.3 Mm.620 15 88.3 rs13482695 42 10
17 Rabl2a RAB, member of RAS oncogene family-like 2A ILMN_2593578 3′ UTR 15 89.4 Mm.23258 15 88.3 rs13482695 36.6 12.2
18 Rabl2a RAB, member of RAS oncogene family-like 2A ILMN_2742942 exon 7 15 89.4 Mm.23258 15 89.4 rs4230970 69.9 7.6
19 Cpne8 copine VIII ILMN_3151149 intron 2 15 90.5 Mm.290991 15 87.9 rs3707587 22.7 9.8
20 Kif21a kinesin family member 21A ILMN_2718716 exon 33 15 90.8 Mm.41379 15 89.4 rs4230970 25.1 12.3

Twenty records were observed to have cis-acting quantitative trait loci (QTL) on chromosome 15 between 82 and 92 Mb. Twenty gene symbols are displayed in the table as well as the description of the gene, probe set identification, probe target, chromosomal location, megabase location, uniGene identification, chromosome in which QTL is located, Locus at peak, the maximum likelihood ratio statistic (LRS), and mean expression.

Freeman, Mol Vis 2011; 17:1355-1372. http://www.molvis.org/molvis/v17/a153

©2011 Molecular Vision http://www.molvis.org/molvis/

ISSN 1090-0535